Variant report

Variant	rs4957389
Chromosome Location	chr5:41323025-41323026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10462017	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10512774	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10512775	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11737958	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739235	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11739338	0.84[ASN][1000 genomes]
rs11739372	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11739553	0.99[ASN][1000 genomes]
rs11739969	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11740787	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11741144	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11741795	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11744499	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11747859	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1373639	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1423312	0.91[ASN][1000 genomes]
rs1460953	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871219	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871220	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871222	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871258	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16871269	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822820	0.95[ASN][1000 genomes]
rs1904178	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904179	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2054445	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2161542	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197422	0.97[ASN][1000 genomes]
rs2329601	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2329602	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2329604	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2329671	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2860000	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245978	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4957153	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4957390	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4957391	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4957392	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60271243	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60917374	0.97[ASN][1000 genomes]
rs61282403	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67043243	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6872806	0.97[ASN][1000 genomes]
rs6886372	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6886899	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6898606	0.97[ASN][1000 genomes]
rs72755961	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72755967	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755968	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755970	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755972	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755973	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755982	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755983	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72755984	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73075962	0.90[ASN][1000 genomes]
rs765176	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs765177	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701760	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7703589	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7704046	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7723649	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724627	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725517	0.96[ASN][1000 genomes]
rs7727658	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7729454	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7735604	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs978727	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41313800-41329200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:41317400-41324800	Weak transcription	Left Ventricle	heart
3	chr5:41317400-41324800	Weak transcription	Ovary	ovary
4	chr5:41322400-41323200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links