Variant report
Variant | rs60917374 |
---|---|
Chromosome Location | chr5:41346314-41346315 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10462017 | 0.96[ASN][1000 genomes] |
rs10512774 | 0.96[ASN][1000 genomes] |
rs10512775 | 0.96[ASN][1000 genomes] |
rs11737958 | 0.93[ASN][1000 genomes] |
rs11739235 | 0.96[ASN][1000 genomes] |
rs11739338 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11739372 | 0.96[ASN][1000 genomes] |
rs11739553 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11739969 | 0.98[ASN][1000 genomes] |
rs11740787 | 0.93[ASN][1000 genomes] |
rs11741144 | 0.97[ASN][1000 genomes] |
rs11741795 | 0.94[ASN][1000 genomes] |
rs11744499 | 0.91[ASN][1000 genomes] |
rs11747859 | 0.98[ASN][1000 genomes] |
rs1373639 | 0.94[ASN][1000 genomes] |
rs1423312 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1460953 | 0.97[ASN][1000 genomes] |
rs161087 | 0.81[EUR][1000 genomes] |
rs16871219 | 0.97[ASN][1000 genomes] |
rs16871220 | 0.97[ASN][1000 genomes] |
rs16871222 | 0.97[ASN][1000 genomes] |
rs16871258 | 0.96[ASN][1000 genomes] |
rs16871269 | 0.99[ASN][1000 genomes] |
rs1822820 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1904178 | 0.96[ASN][1000 genomes] |
rs1904179 | 0.96[ASN][1000 genomes] |
rs2054445 | 0.97[ASN][1000 genomes] |
rs2161542 | 0.97[ASN][1000 genomes] |
rs2197422 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2329601 | 0.97[ASN][1000 genomes] |
rs2329602 | 0.97[ASN][1000 genomes] |
rs2329604 | 0.97[ASN][1000 genomes] |
rs2329671 | 0.98[ASN][1000 genomes] |
rs2860000 | 0.94[ASN][1000 genomes] |
rs318837 | 0.80[EUR][1000 genomes] |
rs318839 | 0.81[EUR][1000 genomes] |
rs318842 | 0.81[EUR][1000 genomes] |
rs4245978 | 0.97[ASN][1000 genomes] |
rs4957153 | 0.97[ASN][1000 genomes] |
rs4957389 | 0.97[ASN][1000 genomes] |
rs4957390 | 0.96[ASN][1000 genomes] |
rs4957391 | 0.97[ASN][1000 genomes] |
rs4957392 | 0.97[ASN][1000 genomes] |
rs60271243 | 0.88[ASN][1000 genomes] |
rs61282403 | 0.97[ASN][1000 genomes] |
rs67043243 | 0.98[ASN][1000 genomes] |
rs6872806 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6886372 | 0.96[ASN][1000 genomes] |
rs6886899 | 0.96[ASN][1000 genomes] |
rs6898606 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72755961 | 0.96[ASN][1000 genomes] |
rs72755967 | 0.97[ASN][1000 genomes] |
rs72755968 | 0.97[ASN][1000 genomes] |
rs72755970 | 0.97[ASN][1000 genomes] |
rs72755972 | 0.97[ASN][1000 genomes] |
rs72755973 | 0.97[ASN][1000 genomes] |
rs72755982 | 0.94[ASN][1000 genomes] |
rs72755983 | 0.96[ASN][1000 genomes] |
rs72755984 | 0.94[ASN][1000 genomes] |
rs73075962 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs765176 | 0.97[ASN][1000 genomes] |
rs765177 | 0.97[ASN][1000 genomes] |
rs7701760 | 0.93[ASN][1000 genomes] |
rs7703589 | 0.97[ASN][1000 genomes] |
rs7704046 | 0.97[ASN][1000 genomes] |
rs7723649 | 0.97[ASN][1000 genomes] |
rs7724627 | 0.93[ASN][1000 genomes] |
rs7725517 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7727658 | 0.97[ASN][1000 genomes] |
rs7729454 | 0.97[ASN][1000 genomes] |
rs7735604 | 0.96[ASN][1000 genomes] |
rs978727 | 0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv427717 | chr5:41201377-41369202 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv830269 | chr5:41209113-41393536 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | esv1851387 | chr5:41336050-41423631 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv1024631 | chr5:41341979-41427953 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:41341400-41350000 | Weak transcription | Left Ventricle | heart |
2 | chr5:41341600-41348800 | Weak transcription | Ovary | ovary |
3 | chr5:41345800-41346800 | Weak transcription | Brain Cingulate Gyrus | brain |
4 | chr5:41345800-41348400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
5 | chr5:41346200-41346600 | Weak transcription | Fetal Heart | heart |