Variant report

Variant	rs73075962
Chromosome Location	chr5:41304935-41304936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10462017	0.88[ASN][1000 genomes]
rs10512774	0.88[ASN][1000 genomes]
rs10512775	0.88[ASN][1000 genomes]
rs11737958	0.93[ASN][1000 genomes]
rs11739235	0.89[ASN][1000 genomes]
rs11739338	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11739372	0.89[ASN][1000 genomes]
rs11739553	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11739969	0.91[ASN][1000 genomes]
rs11740787	0.92[ASN][1000 genomes]
rs11741144	0.88[ASN][1000 genomes]
rs11741795	0.86[ASN][1000 genomes]
rs11744499	0.94[ASN][1000 genomes]
rs11747859	0.89[ASN][1000 genomes]
rs1373639	0.94[ASN][1000 genomes]
rs1423312	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1460953	0.88[ASN][1000 genomes]
rs16871219	0.88[ASN][1000 genomes]
rs16871220	0.88[ASN][1000 genomes]
rs16871222	0.88[ASN][1000 genomes]
rs16871258	0.87[ASN][1000 genomes]
rs16871269	0.91[ASN][1000 genomes]
rs1822820	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1904178	0.89[ASN][1000 genomes]
rs1904179	0.89[ASN][1000 genomes]
rs2054445	0.88[ASN][1000 genomes]
rs2161542	0.90[ASN][1000 genomes]
rs2197422	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2329601	0.88[ASN][1000 genomes]
rs2329602	0.88[ASN][1000 genomes]
rs2329604	0.88[ASN][1000 genomes]
rs2329671	0.91[ASN][1000 genomes]
rs2860000	0.90[ASN][1000 genomes]
rs4245978	0.88[ASN][1000 genomes]
rs4957153	0.88[ASN][1000 genomes]
rs4957389	0.90[ASN][1000 genomes]
rs4957390	0.89[ASN][1000 genomes]
rs4957391	0.88[ASN][1000 genomes]
rs4957392	0.88[ASN][1000 genomes]
rs60271243	0.96[ASN][1000 genomes]
rs60917374	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61282403	0.88[ASN][1000 genomes]
rs67043243	0.91[ASN][1000 genomes]
rs6872806	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6886372	0.89[ASN][1000 genomes]
rs6886899	0.89[ASN][1000 genomes]
rs6898606	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72755961	0.89[ASN][1000 genomes]
rs72755967	0.88[ASN][1000 genomes]
rs72755968	0.88[ASN][1000 genomes]
rs72755970	0.88[ASN][1000 genomes]
rs72755972	0.88[ASN][1000 genomes]
rs72755973	0.88[ASN][1000 genomes]
rs72755982	0.90[ASN][1000 genomes]
rs72755983	0.88[ASN][1000 genomes]
rs72755984	0.90[ASN][1000 genomes]
rs765176	0.88[ASN][1000 genomes]
rs765177	0.88[ASN][1000 genomes]
rs7701760	0.93[ASN][1000 genomes]
rs7703589	0.88[ASN][1000 genomes]
rs7704046	0.88[ASN][1000 genomes]
rs7723649	0.88[ASN][1000 genomes]
rs7724627	0.92[ASN][1000 genomes]
rs7725517	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727658	0.88[ASN][1000 genomes]
rs7729454	0.88[ASN][1000 genomes]
rs7735604	0.88[ASN][1000 genomes]
rs978727	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41300000-41307000	Weak transcription	Aorta	Aorta
2	chr5:41302000-41305600	Enhancers	Fetal Heart	heart
3	chr5:41304800-41305000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:41304800-41305000	Enhancers	Pancreatic Islets	Pancreatic Islet

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