Variant report

Variant	rs4957737
Chromosome Location	chr5:107359523-107359524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10067069	0.89[JPT][hapmap]
rs10076369	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1024975	0.95[JPT][hapmap]
rs10434798	1.00[JPT][hapmap]
rs10434799	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10464046	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10479422	1.00[JPT][hapmap]
rs10479423	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1108067	0.89[JPT][hapmap]
rs11742139	1.00[JPT][hapmap]
rs11951176	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12332109	0.95[JPT][hapmap]
rs13155365	0.92[TSI][hapmap]
rs13161819	0.94[JPT][hapmap];1.00[YRI][hapmap]
rs13173786	1.00[JPT][hapmap]
rs167012	0.81[CHB][hapmap]
rs4957740	1.00[JPT][hapmap]
rs6858950	0.81[JPT][hapmap];0.90[MEX][hapmap]
rs6871109	0.95[JPT][hapmap]
rs6897064	1.00[JPT][hapmap]
rs723398	0.81[JPT][hapmap];0.90[MEX][hapmap]
rs7729356	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
2	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
3	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
6	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:107355000-107360400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107355000-107361000	Weak transcription	Primary B cells from cord blood	blood
10	chr5:107359400-107361400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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