Variant report

Variant	rs10464046
Chromosome Location	chr5:107415261-107415262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10043959	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10044509	0.81[AMR][1000 genomes]
rs10067069	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068595	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070441	0.80[CEU][hapmap]
rs10071475	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10076369	0.89[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10079990	0.80[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1024975	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10434798	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs10434799	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10479422	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10479423	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1108067	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11242659	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11742139	0.89[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.92[ASN][1000 genomes]
rs11743938	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11747222	0.81[AMR][1000 genomes]
rs11951176	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12189008	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12332109	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12513533	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13161819	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13173786	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.93[ASN][1000 genomes]
rs13174635	0.85[GIH][hapmap];0.82[TSI][hapmap]
rs17165769	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2416523	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs288159	0.86[CHB][hapmap]
rs288160	0.86[CHB][hapmap]
rs34841609	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4957735	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4957737	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4957740	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4957741	0.81[AMR][1000 genomes]
rs6868799	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6871109	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6897064	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7707085	0.93[ASN][1000 genomes]
rs7729356	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107410200-107415400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:107411000-107415600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107411600-107416000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:107412200-107418000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:107412200-107420600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107412600-107416000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:107413600-107418400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:107414000-107415400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:107414000-107415400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:107414200-107415600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:107414600-107415400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:107414600-107415800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:107414600-107416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:107414600-107416000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:107414600-107416200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:107414600-107419000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:107414800-107415600	Weak transcription	Adipose Nuclei	Adipose
20	chr5:107414800-107427800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:107415000-107415400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:107415000-107415400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:107415000-107421000	Weak transcription	Pancreas	Pancrea

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