Variant report

Variant	rs11242659
Chromosome Location	chr5:107352533-107352534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10043959	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10067069	0.85[ASN][1000 genomes]
rs10068595	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10071475	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10076369	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1024975	0.93[ASN][1000 genomes]
rs10434798	0.93[ASN][1000 genomes]
rs10434799	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10464046	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10479422	0.88[ASN][1000 genomes]
rs10479423	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1108067	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11742139	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11743938	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11951176	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189008	0.92[ASN][1000 genomes]
rs12332109	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12513533	0.88[EUR][1000 genomes]
rs13161819	0.88[ASN][1000 genomes]
rs13173786	0.92[ASN][1000 genomes]
rs17165769	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2416523	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34841609	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4957735	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4957740	0.88[ASN][1000 genomes]
rs6871109	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6897064	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7707085	0.93[ASN][1000 genomes]
rs7729356	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
5	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
6	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
8	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
10	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:107347800-107353800	Weak transcription	Spleen	Spleen
12	chr5:107349800-107353400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:107350600-107353000	Weak transcription	Fetal Intestine Large	intestine
14	chr5:107350600-107353400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:107350800-107356200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:107351400-107355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:107351600-107354000	Weak transcription	Placenta	Placenta
18	chr5:107351800-107352600	Enhancers	Dnd41	blood
19	chr5:107352400-107354600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:107352400-107354800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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