Variant report

Variant	rs10071475
Chromosome Location	chr5:107410653-107410654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10043959	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10044509	0.81[AMR][1000 genomes]
rs10067069	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10068595	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076369	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079990	0.82[EUR][1000 genomes]
rs1024975	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10434798	0.93[ASN][1000 genomes]
rs10434799	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10464046	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10479422	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10479423	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1108067	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11242659	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11242662	0.82[AFR][1000 genomes]
rs11742139	0.93[ASN][1000 genomes]
rs11743938	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11747222	0.81[AMR][1000 genomes]
rs11951176	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12189008	0.94[ASN][1000 genomes]
rs12332109	0.92[ASN][1000 genomes]
rs12513533	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13161819	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13173786	0.94[ASN][1000 genomes]
rs17165769	0.93[ASN][1000 genomes]
rs2416523	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34841609	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4957735	0.93[ASN][1000 genomes]
rs4957740	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6868799	0.82[EUR][1000 genomes]
rs6871109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6897064	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7707085	0.93[ASN][1000 genomes]
rs7729356	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:107406200-107413200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:107409600-107412400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:107410000-107411600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:107410200-107410800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:107410200-107410800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:107410200-107410800	Enhancers	HepG2	liver
10	chr5:107410200-107411000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:107410200-107411200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:107410200-107411200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:107410200-107411200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:107410200-107413800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:107410200-107413800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:107410200-107415400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:107410400-107410800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:107410400-107414600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links