Variant report

Variant	rs10079990
Chromosome Location	chr5:107437025-107437026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107436261..107438688-chr5:107440363..107442788,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10044509	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065182	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10067069	0.87[MEX][hapmap]
rs10070441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10071475	0.82[EUR][1000 genomes]
rs10076369	0.87[MEX][hapmap]
rs1019464	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1019465	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10464046	0.80[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10464047	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10464048	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10479423	0.82[EUR][1000 genomes]
rs10479427	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10900903	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1108067	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11242663	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11742139	0.83[MEX][hapmap]
rs11747222	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11951176	0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12513533	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13153344	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13161819	0.86[CHB][hapmap]
rs13166164	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174635	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13179507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs158179	0.87[CHB][hapmap]
rs1862221	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2161190	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286765	0.81[CEU][hapmap]
rs34405011	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4957548	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957741	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6868799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871109	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs6876279	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6897064	0.82[EUR][1000 genomes]
rs7729356	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107429400-107437400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:107436000-107437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:107436400-107437600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:107436400-107437800	Enhancers	Brain Anterior Caudate	brain
9	chr5:107436400-107437800	Enhancers	Brain Hippocampus Middle	brain
10	chr5:107436400-107437800	Enhancers	Brain Substantia Nigra	brain
11	chr5:107436600-107437200	Enhancers	Fetal Lung	lung
12	chr5:107436600-107437400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:107436600-107437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:107436600-107437800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:107436600-107437800	Enhancers	Brain Angular Gyrus	brain
16	chr5:107436600-107437800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr5:107436600-107437800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr5:107436600-107439000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:107436800-107437200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:107436800-107437600	Weak transcription	Right Ventricle	heart
21	chr5:107436800-107438200	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:107437000-107437400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:107437000-107437800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:107437000-107437800	Enhancers	Colon Smooth Muscle	Colon
25	chr5:107437000-107437800	Enhancers	Right Atrium	heart
26	chr5:107437000-107437800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr5:107437000-107438000	Enhancers	Osteobl	bone
28	chr5:107437000-107438400	Enhancers	Left Ventricle	heart
29	chr5:107437000-107438400	Enhancers	Psoas Muscle	Psoas
30	chr5:107437000-107438400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr5:107437000-107439600	Enhancers	HUES64 Cell Line	embryonic stem cell

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