Variant report

Variant	rs10067069
Chromosome Location	chr5:107420876-107420877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10043959	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10044509	0.81[CEU][hapmap]
rs10065182	0.80[CEU][hapmap]
rs10068595	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10071475	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10076369	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10079990	0.87[MEX][hapmap]
rs1019465	0.80[CEU][hapmap]
rs1024975	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10434798	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10434799	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10464046	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464048	0.84[CEU][hapmap]
rs10479422	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10479423	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10479427	0.81[CEU][hapmap]
rs10900903	0.85[CHB][hapmap]
rs1108067	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11242659	0.85[ASN][1000 genomes]
rs11242662	0.97[LWK][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs11242663	0.81[CEU][hapmap]
rs11742139	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11743938	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11951176	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12189008	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12332109	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12513533	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13161819	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13173786	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13174635	0.81[CEU][hapmap]
rs17165769	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2416523	0.84[ASN][1000 genomes]
rs288159	0.91[CHB][hapmap]
rs288160	0.91[CHB][hapmap]
rs288175	0.82[CHB][hapmap]
rs288177	0.81[CHB][hapmap]
rs288178	0.82[CHB][hapmap]
rs288179	0.82[CHB][hapmap]
rs288181	0.82[CHB][hapmap]
rs34841609	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4957735	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4957737	0.89[JPT][hapmap]
rs4957740	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6858950	0.81[JPT][hapmap]
rs6871109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6897064	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723398	0.81[JPT][hapmap]
rs7707085	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7729356	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107414800-107427800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:107415000-107421000	Weak transcription	Pancreas	Pancrea
5	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107416200-107424200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:107416800-107427400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:107418000-107421000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:107418600-107421200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:107419000-107421000	Weak transcription	Adipose Nuclei	Adipose
11	chr5:107419200-107421000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:107419600-107421000	Weak transcription	Placenta	Placenta
14	chr5:107420000-107421000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:107420000-107421200	Weak transcription	Left Ventricle	heart
16	chr5:107420000-107424800	Weak transcription	Fetal Intestine Small	intestine
17	chr5:107420000-107433000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:107420200-107421200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:107420200-107422600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:107420200-107424400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:107420200-107426600	Weak transcription	Brain Hippocampus Middle	brain
22	chr5:107420200-107426800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:107420200-107427800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:107420600-107421400	Enhancers	HepG2	liver
25	chr5:107420800-107421000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:107420800-107421000	Enhancers	Fetal Lung	lung

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