Variant report

Variant	rs4957735
Chromosome Location	chr5:107358087-107358088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10043959	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10067069	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10068595	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10071475	0.93[ASN][1000 genomes]
rs10076369	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1024975	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10434798	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10434799	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10464046	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10479422	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10479423	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1108067	0.92[ASN][1000 genomes]
rs11242659	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11742139	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743938	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11951176	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12189008	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12332109	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12513533	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13161819	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13173786	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17165769	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2416523	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34841609	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4957740	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6871109	0.93[ASN][1000 genomes]
rs6897064	0.93[ASN][1000 genomes]
rs7707085	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7729356	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3378142	chr5:107354953-107358201	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
2	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
3	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
6	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:107352800-107358200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:107355000-107360400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:107355000-107361000	Weak transcription	Primary B cells from cord blood	blood
11	chr5:107355400-107358200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:107357600-107359000	Enhancers	Pancreatic Islets	Pancreatic Islet

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