Variant report

Variant	rs288160
Chromosome Location	chr5:107364269-107364270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107364061..107366146-chr5:107369915..107372470,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10067069	0.91[CHB][hapmap]
rs10076369	0.91[CHB][hapmap]
rs1024975	0.91[CHB][hapmap]
rs10434798	0.91[CHB][hapmap]
rs10434799	0.91[CHB][hapmap]
rs10464046	0.86[CHB][hapmap]
rs10479422	0.86[CHB][hapmap]
rs10479423	0.91[CHB][hapmap]
rs1108067	0.91[CHB][hapmap]
rs11742139	0.91[CHB][hapmap]
rs11951176	0.91[CHB][hapmap]
rs12332109	0.91[CHB][hapmap]
rs13161819	0.91[CHB][hapmap]
rs13173786	0.91[CHB][hapmap]
rs158179	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs167012	0.86[JPT][hapmap]
rs288159	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288168	0.84[GIH][hapmap]
rs288175	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288177	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288178	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288179	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288181	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4957740	0.86[CHB][hapmap]
rs6871109	0.91[CHB][hapmap]
rs6897064	0.91[CHB][hapmap]
rs7729356	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3435266	chr5:107362345-107373452	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3469699	chr5:107362374-107373448	Weak transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3469701	chr5:107362374-107373448	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3469700	chr5:107362376-107373479	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107361000-107369800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107361200-107368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107361600-107369200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:107363600-107364600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:107363800-107364600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:107363800-107364800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:107363800-107365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:107364000-107364400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:107364000-107364600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:107364000-107364600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:107364000-107365000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:107364000-107365200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:107364000-107365200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:107364000-107390000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:107364200-107364400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:107364200-107364400	Enhancers	Left Ventricle	heart
18	chr5:107364200-107364400	Genic enhancers	Pancreas	Pancrea
19	chr5:107364200-107364400	Enhancers	Psoas Muscle	Psoas
20	chr5:107364200-107364400	Enhancers	Right Atrium	heart
21	chr5:107364200-107365200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:107364200-107365200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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