Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10044509	0.88[CHB][hapmap]
rs10065182	0.87[CHB][hapmap]
rs10070441	0.88[CHB][hapmap]
rs10079990	0.87[CHB][hapmap]
rs1019465	0.88[CHB][hapmap]
rs10464047	0.87[CHB][hapmap]
rs10464048	0.88[CHB][hapmap]
rs10479427	0.87[CHB][hapmap]
rs10900903	0.86[CHB][hapmap]
rs11242663	0.87[CHB][hapmap]
rs13174635	0.87[CHB][hapmap]
rs13179507	0.87[CHB][hapmap]
rs288159	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs288160	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs288175	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs288177	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs288178	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs288179	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs288181	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6876279	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107437400-107445400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:107437800-107446000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:107437800-107447600	Weak transcription	Right Atrium	heart
5	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
6	chr5:107438400-107446000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:107438400-107447600	Weak transcription	Pancreas	Pancrea
8	chr5:107438400-107448800	Weak transcription	Left Ventricle	heart
9	chr5:107440000-107445800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:107440600-107450200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:107441200-107455000	Weak transcription	Psoas Muscle	Psoas
12	chr5:107441800-107457400	Weak transcription	Primary hematopoietic stem cells	blood

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