Variant report

Variant	rs10464048
Chromosome Location	chr5:107485907-107485908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10044509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10057274	0.82[CEU][hapmap]
rs10057905	0.82[CEU][hapmap]
rs10065182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10067069	0.84[CEU][hapmap]
rs10070441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10070565	0.82[CEU][hapmap]
rs10076369	0.81[CEU][hapmap]
rs10079990	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1019464	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1019465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1024975	0.81[CEU][hapmap]
rs10434798	0.81[CEU][hapmap]
rs10434799	0.81[CEU][hapmap]
rs10464047	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10477889	0.82[CEU][hapmap]
rs10479422	0.81[CEU][hapmap]
rs10479427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10900903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1108067	0.81[CEU][hapmap]
rs11242663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11742139	0.81[CEU][hapmap]
rs11747222	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11951176	0.81[CEU][hapmap]
rs12332109	0.82[CEU][hapmap]
rs13153344	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13161819	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs13166164	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13173786	0.81[CEU][hapmap]
rs13174270	0.82[CEU][hapmap]
rs13174635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13179507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158179	0.88[CHB][hapmap]
rs1862221	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2161190	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286762	0.81[CEU][hapmap]
rs286765	0.85[CEU][hapmap]
rs2922409	0.82[CEU][hapmap]
rs2922410	0.81[CEU][hapmap]
rs2922434	0.81[CEU][hapmap]
rs2966805	0.81[CEU][hapmap]
rs2966806	0.81[CEU][hapmap]
rs2966808	0.82[CEU][hapmap]
rs2966809	0.81[CEU][hapmap]
rs2966812	0.81[CEU][hapmap]
rs2966819	0.82[CEU][hapmap]
rs34405011	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3756573	0.82[CEU][hapmap]
rs399438	0.82[CEU][hapmap]
rs4385196	0.81[CEU][hapmap]
rs4957548	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957740	0.82[CEU][hapmap]
rs4957741	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4957750	0.82[CEU][hapmap]
rs6860212	0.81[CEU][hapmap]
rs6868799	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6871109	0.81[CEU][hapmap]
rs6876279	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6897064	0.81[CEU][hapmap]
rs715638	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107477600-107486000	Weak transcription	Psoas Muscle	Psoas
7	chr5:107478800-107488400	Weak transcription	Fetal Lung	lung
8	chr5:107479400-107486000	Weak transcription	Pancreas	Pancrea
9	chr5:107480400-107500000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:107481000-107496400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:107481000-107498400	Weak transcription	Fetal Intestine Large	intestine
13	chr5:107481600-107504400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:107482400-107498400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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