Variant report

Variant	rs4958399
Chromosome Location	chr5:154529828-154529829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12189451	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17574090	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580140	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580141	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580145	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070270	0.80[EUR][1000 genomes]
rs6875554	0.80[EUR][1000 genomes]
rs7716693	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154528600-154533600	Weak transcription	Fetal Heart	heart
2	chr5:154529600-154530000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:154529600-154530000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:154529600-154530000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:154529600-154530000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:154529600-154530000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:154529600-154530000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:154529600-154530000	Enhancers	Left Ventricle	heart
9	chr5:154529600-154530000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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