Variant report

Variant	rs6580145
Chromosome Location	chr5:154527310-154527311
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154324958..154325954-chr5:154526531..154527453,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12189451	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158580	0.91[AMR][1000 genomes]
rs13178765	0.86[AMR][1000 genomes]
rs17574090	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17652057	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34595665	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35665453	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35773859	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4958398	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4958399	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958786	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4958787	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67070270	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6863557	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6863911	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6866348	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6867910	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6870119	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6870287	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6875548	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6875554	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6882113	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6882276	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6882597	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6882611	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6888525	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6889153	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6893581	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6894731	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6897840	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71597687	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7705491	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7716693	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154519400-154528000	Weak transcription	Fetal Heart	heart
2	chr5:154527200-154528400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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