Variant report

Variant	rs6870287
Chromosome Location	chr5:154508910-154508911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12189451	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13158580	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13178765	0.85[AMR][1000 genomes]
rs17574090	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17652057	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34595665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35665453	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35773859	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4958398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4958786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4958787	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6580140	0.86[EUR][1000 genomes]
rs6580141	0.86[EUR][1000 genomes]
rs6580145	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67070270	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6863557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6863911	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6866348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6867910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6870119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6875548	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6875554	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6882113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6882276	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6882597	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6882611	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6888525	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6889153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6893581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6894731	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6897840	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71597687	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7705491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7716693	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154506800-154515200	Weak transcription	Fetal Heart	heart
2	chr5:154508200-154509800	Enhancers	NHEK	skin
3	chr5:154508400-154509600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154508400-154509800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:154508600-154509200	Flanking Active TSS	A549	lung
6	chr5:154508600-154512200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:154508800-154509200	Enhancers	HMEC	breast

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