Variant report

Variant	rs6580140
Chromosome Location	chr5:154509735-154509736
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11167710	1.00[CHB][hapmap]
rs13158580	1.00[ASN][1000 genomes]
rs13178765	1.00[ASN][1000 genomes]
rs17652057	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34595665	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35665453	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35773859	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958397	1.00[CHB][hapmap]
rs4958398	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958399	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4958781	1.00[CHB][hapmap]
rs4958786	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958787	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580141	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070270	0.84[EUR][1000 genomes]
rs6863557	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863911	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866348	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867910	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870119	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870287	0.86[EUR][1000 genomes]
rs6875548	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875554	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882113	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882276	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882611	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888525	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889153	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893581	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894731	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897840	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597687	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705491	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154506800-154515200	Weak transcription	Fetal Heart	heart
2	chr5:154508200-154509800	Enhancers	NHEK	skin
3	chr5:154508400-154509800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:154508600-154512200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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