Variant report

Variant	rs4959042
Chromosome Location	chr6:30079893-30079894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17180528	1.00[EUR][1000 genomes]
rs17186951	1.00[EUR][1000 genomes]
rs17187553	1.00[EUR][1000 genomes]
rs17187658	1.00[EUR][1000 genomes]
rs17187826	1.00[EUR][1000 genomes]
rs17187847	1.00[EUR][1000 genomes]
rs17194258	1.00[EUR][1000 genomes]
rs4713289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713290	0.94[ASN][1000 genomes]
rs4713297	0.87[ASN][1000 genomes]
rs56908820	1.00[EUR][1000 genomes]
rs6917420	1.00[EUR][1000 genomes]
rs7740741	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30078200-30080600	Active TSS	Stomach Mucosa	stomach
2	chr6:30078400-30080000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:30078400-30081400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:30079000-30080400	Bivalent/Poised TSS	Fetal Stomach	stomach
5	chr6:30079200-30080000	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:30079200-30080000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
7	chr6:30079200-30080200	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr6:30079200-30081000	Active TSS	Colonic Mucosa	Colon
9	chr6:30079400-30080000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
10	chr6:30079400-30080000	Enhancers	GM12878-XiMat	blood
11	chr6:30079400-30080400	Bivalent/Poised TSS	Small Intestine	intestine
12	chr6:30079400-30080600	Flanking Active TSS	Hela-S3	cervix
13	chr6:30079600-30080000	Weak transcription	Gastric	stomach
14	chr6:30079600-30080400	Enhancers	A549	lung
15	chr6:30079800-30080000	Active TSS	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links