Variant report

Variant	rs4959976
Chromosome Location	chr6:4445953-4445954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4445245..4447675-chr6:4451631..4454250,2	K562	blood:

Extended variants
information (count: 199 )
Associated
traits (count: 227 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1010638	0.90[ASN][1000 genomes]
rs10447477	0.90[ASN][1000 genomes]
rs10447478	0.89[ASN][1000 genomes]
rs10458172	0.94[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10458173	0.91[ASN][1000 genomes]
rs10458174	0.91[ASN][1000 genomes]
rs10900958	0.91[ASN][1000 genomes]
rs10900959	0.91[ASN][1000 genomes]
rs10900960	0.91[ASN][1000 genomes]
rs10900961	0.91[ASN][1000 genomes]
rs10900962	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11242933	0.91[ASN][1000 genomes]
rs11242934	0.91[ASN][1000 genomes]
rs11242935	0.91[ASN][1000 genomes]
rs11242936	0.91[ASN][1000 genomes]
rs11242937	0.91[ASN][1000 genomes]
rs11242938	0.93[ASN][1000 genomes]
rs11242939	0.91[ASN][1000 genomes]
rs11242942	0.82[ASN][1000 genomes]
rs11242943	0.83[ASN][1000 genomes]
rs11242944	0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs11242945	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs11242946	0.94[ASN][1000 genomes]
rs11242947	0.94[ASN][1000 genomes]
rs11242948	0.89[ASN][1000 genomes]
rs11242950	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755069	0.91[ASN][1000 genomes]
rs12190411	0.81[CEU][hapmap]
rs12191559	0.92[ASN][1000 genomes]
rs12200144	0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs12203267	0.93[ASN][1000 genomes]
rs12207441	0.90[ASN][1000 genomes]
rs12207864	0.93[ASN][1000 genomes]
rs12210818	0.91[ASN][1000 genomes]
rs12211520	0.94[ASN][1000 genomes]
rs12211781	0.89[ASN][1000 genomes]
rs12529480	0.94[ASN][1000 genomes]
rs1265298	0.95[ASN][1000 genomes]
rs1265299	0.90[ASN][1000 genomes]
rs1265303	0.96[ASN][1000 genomes]
rs1265304	0.91[ASN][1000 genomes]
rs1265305	0.91[ASN][1000 genomes]
rs12660869	0.95[ASN][1000 genomes]
rs12663036	0.89[ASN][1000 genomes]
rs12664576	0.89[ASN][1000 genomes]
rs12665814	0.89[ASN][1000 genomes]
rs13213475	0.91[ASN][1000 genomes]
rs13214482	0.86[ASN][1000 genomes]
rs1330783	0.90[ASN][1000 genomes]
rs1330784	0.91[ASN][1000 genomes]
rs1330786	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1330787	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330788	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1330789	0.94[ASN][1000 genomes]
rs1330791	0.93[ASN][1000 genomes]
rs1411654	0.93[ASN][1000 genomes]
rs1411656	0.91[ASN][1000 genomes]
rs1581971	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1581972	0.91[ASN][1000 genomes]
rs1590939	0.91[ASN][1000 genomes]
rs17510496	0.89[ASN][1000 genomes]
rs17510539	0.89[ASN][1000 genomes]
rs17570029	0.93[ASN][1000 genomes]
rs2026183	0.86[ASN][1000 genomes]
rs2026184	0.86[ASN][1000 genomes]
rs2026185	0.94[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2150233	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2150234	0.89[ASN][1000 genomes]
rs2183497	0.91[ASN][1000 genomes]
rs2225369	1.00[ASN][1000 genomes]
rs2326490	0.87[ASN][1000 genomes]
rs2875944	0.90[ASN][1000 genomes]
rs4286821	0.93[ASN][1000 genomes]
rs4403297	0.89[ASN][1000 genomes]
rs4481463	0.89[ASN][1000 genomes]
rs4513847	0.91[ASN][1000 genomes]
rs4534025	0.89[ASN][1000 genomes]
rs4621669	0.91[ASN][1000 genomes]
rs4959287	0.91[ASN][1000 genomes]
rs4959288	0.93[ASN][1000 genomes]
rs4959292	0.95[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs4959293	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4959294	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4959960	0.90[ASN][1000 genomes]
rs4959961	0.93[ASN][1000 genomes]
rs4959962	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4959965	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4959966	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4959968	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4959969	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4959970	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4959973	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959974	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4959978	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5002972	0.95[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59075559	0.91[ASN][1000 genomes]
rs59425532	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60109220	0.89[ASN][1000 genomes]
rs6597055	0.91[ASN][1000 genomes]
rs6597060	0.88[ASN][1000 genomes]
rs6597066	0.94[ASN][1000 genomes]
rs6597067	0.94[ASN][1000 genomes]
rs6597068	0.94[ASN][1000 genomes]
rs6597069	0.93[ASN][1000 genomes]
rs66815625	0.94[ASN][1000 genomes]
rs67284074	0.94[ASN][1000 genomes]
rs67655715	0.89[ASN][1000 genomes]
rs6902044	0.91[ASN][1000 genomes]
rs6904462	0.94[ASN][1000 genomes]
rs6908618	0.87[ASN][1000 genomes]
rs6908628	0.88[ASN][1000 genomes]
rs6911222	0.89[ASN][1000 genomes]
rs6912116	0.89[ASN][1000 genomes]
rs6912489	0.89[ASN][1000 genomes]
rs6912741	0.91[ASN][1000 genomes]
rs6913210	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914316	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917196	0.89[ASN][1000 genomes]
rs6920549	0.91[ASN][1000 genomes]
rs6923978	0.94[ASN][1000 genomes]
rs6924842	0.95[ASN][1000 genomes]
rs6926926	0.89[ASN][1000 genomes]
rs6927710	0.91[ASN][1000 genomes]
rs6929358	0.91[ASN][1000 genomes]
rs6930889	0.87[ASN][1000 genomes]
rs6931444	0.89[ASN][1000 genomes]
rs6934676	0.89[ASN][1000 genomes]
rs6937848	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7450619	0.91[ASN][1000 genomes]
rs7453615	0.93[ASN][1000 genomes]
rs7454057	0.91[ASN][1000 genomes]
rs7750156	0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs7752768	0.93[ASN][1000 genomes]
rs7754765	0.88[ASN][1000 genomes]
rs7756945	0.89[ASN][1000 genomes]
rs7760765	0.86[ASN][1000 genomes]
rs7765880	0.89[ASN][1000 genomes]
rs7766314	0.89[ASN][1000 genomes]
rs911568	0.96[ASN][1000 genomes]
rs911569	0.96[ASN][1000 genomes]
rs9328251	0.86[ASN][1000 genomes]
rs9328252	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9378400	0.89[ASN][1000 genomes]
rs9378872	0.89[ASN][1000 genomes]
rs9378873	0.90[ASN][1000 genomes]
rs9378874	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9378875	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9378876	0.91[ASN][1000 genomes]
rs9378877	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9392046	0.94[ASN][1000 genomes]
rs9392047	0.94[ASN][1000 genomes]
rs9392594	0.89[ASN][1000 genomes]
rs9392596	0.91[ASN][1000 genomes]
rs9392597	0.89[ASN][1000 genomes]
rs9392598	0.87[AMR][1000 genomes]
rs9392599	0.86[AMR][1000 genomes]
rs9405243	0.86[AMR][1000 genomes]
rs9405731	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9405738	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9405742	0.98[ASN][1000 genomes]
rs9504074	0.91[ASN][1000 genomes]
rs9504076	0.88[ASN][1000 genomes]
rs9504089	0.95[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs9504090	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9504091	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9504093	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9504094	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9504096	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600861	chr6:4238488-4469641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv462618	chr6:4238488-4472587	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv600862	chr6:4238488-4472587	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv949364	chr6:4253413-4466981	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv600863	chr6:4255387-4472587	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1027498	chr6:4255640-4471635	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2763995	chr6:4255640-4474114	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1020205	chr6:4255640-4474114	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv600864	chr6:4255708-4464630	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv516402	chr6:4255708-4472587	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv462619	chr6:4255708-4472587	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv600865	chr6:4255708-4472587	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv462620	chr6:4255708-4481421	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv600866	chr6:4255708-4481421	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv600867	chr6:4255725-4464630	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv462621	chr6:4255725-4472587	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv600868	chr6:4255725-4472587	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv1029501	chr6:4255745-4471635	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv432845	chr6:4255905-4471472	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv1030655	chr6:4257190-4473701	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv538108	chr6:4257190-4473701	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
22	nsv1030840	chr6:4257390-4473562	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv538109	chr6:4257390-4473562	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv1026890	chr6:4259075-4471635	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv1030588	chr6:4264933-4455210	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv1021257	chr6:4264933-4473384	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
27	nsv538110	chr6:4264933-4473384	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
28	nsv1016621	chr6:4277411-4473384	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
29	nsv883413	chr6:4371622-4474114	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv1021743	chr6:4382308-4494308	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
31	nsv538111	chr6:4382308-4494308	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:227)

SNP	Gene	Cis/trans	Tissue	Source
rs4959976	RPP40	cis	cerebellum	SCAN
rs4959976	SEPT13	cis	Liver	GTEx
rs4959976	LOC100131588	cis	Liver	GTEx
rs4959976	hCT1971185.1	trans	multi-tissue	Pritchard
rs4959976	AMOTL2	cis	Liver	GTEx
rs4959976	XM_210268	trans	multi-tissue	Pritchard
rs4959976	MAK10	cis	Liver	GTEx
rs4959976	THBS3	trans	multi-tissue	Pritchard
rs4959976	ENST00000297304	trans	multi-tissue	Pritchard
rs4959976	hCT8710.3	trans	multi-tissue	Pritchard
rs4959976	RPS15AP17	cis	Liver	GTEx
rs4959976	hCT2264309	trans	multi-tissue	Pritchard
rs4959976	hCT1641774.2	trans	multi-tissue	Pritchard
rs4959976	RPS13	cis	Liver	GTEx
rs4959976	hCT1644652.3	trans	multi-tissue	Pritchard
rs4959976	LOC647077	cis	Liver	GTEx
rs4959976	hCT11100.3	trans	multi-tissue	Pritchard
rs4959976	hCT2316782	trans	multi-tissue	Pritchard
rs4959976	DUSP12	trans	multi-tissue	Pritchard
rs4959976	LOC100132425	cis	Liver	GTEx
rs4959976	SPG7	trans	multi-tissue	Pritchard
rs4959976	ENST00000295230	trans	multi-tissue	Pritchard
rs4959976	EXOC3L	cis	Liver	GTEx
rs4959976	hCT2279816	trans	multi-tissue	Pritchard
rs4959976	NACAP1	trans	multi-tissue	Pritchard
rs4959976	hCT1951691.1	trans	multi-tissue	Pritchard
rs4959976	ZFP91	trans	multi-tissue	Pritchard
rs4959976	AB019567	trans	multi-tissue	Pritchard
rs4959976	KLF3	trans	multi-tissue	Pritchard
rs4959976	LOC100130109	cis	Liver	GTEx
rs4959976	RPL31P49	cis	Liver	GTEx
rs4959976	TNNC1	trans	multi-tissue	Pritchard
rs4959976	RPL17P18	cis	Liver	GTEx
rs4959976	XM_069039	trans	multi-tissue	Pritchard
rs4959976	RPL21P2	cis	Liver	GTEx
rs4959976	STX16	trans	multi-tissue	Pritchard
rs4959976	XM_063329	trans	multi-tissue	Pritchard
rs4959976	RPL23AP7	trans	multi-tissue	Pritchard
rs4959976	ENST00000273844	trans	multi-tissue	Pritchard
rs4959976	ENST00000296173	trans	multi-tissue	Pritchard
rs4959976	RPS15AP11	cis	Liver	GTEx
rs4959976	hCT1644160.1	trans	multi-tissue	Pritchard
rs4959976	PDCD2	cis	Liver	GTEx
rs4959976	C4orf37	cis	Liver	GTEx
rs4959976	hCT1818343.1	trans	multi-tissue	Pritchard
rs4959976	RPL31P17	cis	Liver	GTEx
rs4959976	hCT2268587	trans	multi-tissue	Pritchard
rs4959976	MEG3	trans	multi-tissue	Pritchard
rs4959976	RPL23AP7	cis	Liver	GTEx
rs4959976	TIAL1	cis	Liver	GTEx
rs4959976	hCT1833730.2	trans	multi-tissue	Pritchard
rs4959976	hCT1640921.3	trans	multi-tissue	Pritchard
rs4959976	XM_210688	trans	multi-tissue	Pritchard
rs4959976	GSDMB	cis	Liver	GTEx
rs4959976	RPS13	trans	multi-tissue	Pritchard
rs4959976	hCT31030.2	trans	multi-tissue	Pritchard
rs4959976	DNAJC7	trans	multi-tissue	Pritchard
rs4959976	RPS8P7	cis	Liver	GTEx
rs4959976	hCT1813185.1	trans	multi-tissue	Pritchard
rs4959976	MAK10	trans	multi-tissue	Pritchard
rs4959976	RPL21P93	cis	Liver	GTEx
rs4959976	hCT1640964.3	trans	multi-tissue	Pritchard
rs4959976	XM_069184	trans	multi-tissue	Pritchard
rs4959976	TAZ	cis	Liver	GTEx
rs4959976	hCT1641307.2	trans	multi-tissue	Pritchard
rs4959976	RPL31	trans	multi-tissue	Pritchard
rs4959976	RPS8	trans	multi-tissue	Pritchard
rs4959976	hCT13257.2	trans	multi-tissue	Pritchard
rs4959976	RPS23P8	cis	Liver	GTEx
rs4959976	hCT1643073.3	trans	multi-tissue	Pritchard
rs4959976	RPL27P2	cis	Liver	GTEx
rs4959976	RPL37P6	trans	multi-tissue	Pritchard
rs4959976	hCT1825517	trans	multi-tissue	Pritchard
rs4959976	RPL37	trans	multi-tissue	Pritchard
rs4959976	PSCD1	trans	multi-tissue	Pritchard
rs4959976	GNAI3	cis	Liver	GTEx
rs4959976	LOC391807	cis	Liver	GTEx
rs4959976	hCT2250591	cis	multi-tissue	Pritchard
rs4959976	hCT2309330	trans	multi-tissue	Pritchard
rs4959976	RPL41P1	cis	Liver	GTEx
rs4959976	HELZ	trans	multi-tissue	Pritchard
rs4959976	KAT2A	cis	Liver	GTEx
rs4959976	RPL39P20	cis	Liver	GTEx
rs4959976	RPL31P38	cis	Liver	GTEx
rs4959976	STX16	cis	Liver	GTEx
rs4959976	XM_062742	trans	multi-tissue	Pritchard
rs4959976	NM_022759	trans	multi-tissue	Pritchard
rs4959976	TUBB2A	cis	cerebellum	SCAN
rs4959976	RPL21	cis	Liver	GTEx
rs4959976	ZNF391	cis	Liver	GTEx
rs4959976	LOC100130003	cis	Liver	GTEx
rs4959976	RPS29	trans	multi-tissue	Pritchard
rs4959976	RPL35A	trans	multi-tissue	Pritchard
rs4959976	hCT14349.1	trans	multi-tissue	Pritchard
rs4959976	SNRPE	trans	multi-tissue	Pritchard
rs4959976	hCT1957934	trans	multi-tissue	Pritchard
rs4959976	RPTOR	cis	Liver	GTEx
rs4959976	ATP5G3	trans	multi-tissue	Pritchard
rs4959976	ENST00000238047	trans	multi-tissue	Pritchard
rs4959976	COX7AP2	cis	Liver	GTEx
rs4959976	RPL31P5	cis	Liver	GTEx
rs4959976	hCT1644366.1	trans	multi-tissue	Pritchard
rs4959976	XM_116181	trans	multi-tissue	Pritchard
rs4959976	SNRPE	cis	Liver	GTEx
rs4959976	RPS8P1	cis	Liver	GTEx
rs4959976	hCT2313514	trans	multi-tissue	Pritchard
rs4959976	hCT1643228.2	trans	multi-tissue	Pritchard
rs4959976	ZFP91	cis	Liver	GTEx
rs4959976	AMOTL2	trans	multi-tissue	Pritchard
rs4959976	hCT1823041.1	trans	multi-tissue	Pritchard
rs4959976	RPL31	cis	Liver	GTEx
rs4959976	PDCD2	trans	multi-tissue	Pritchard
rs4959976	ENST00000284026	trans	multi-tissue	Pritchard
rs4959976	XM_210657	cis	multi-tissue	Pritchard
rs4959976	hCT2326181	trans	multi-tissue	Pritchard
rs4959976	ENST00000281678	trans	multi-tissue	Pritchard
rs4959976	RPL17P41	cis	Liver	GTEx
rs4959976	RPL37P6	cis	Liver	GTEx
rs4959976	RPL21P14	cis	Liver	GTEx
rs4959976	hCT14597.1	trans	multi-tissue	Pritchard
rs4959976	hCT2324828	trans	multi-tissue	Pritchard
rs4959976	RPS15AP34	cis	Liver	GTEx
rs4959976	RPP40	cis	multi-tissue	Pritchard
rs4959976	RPL23	cis	Liver	GTEx
rs4959976	hCT1643494.2	trans	multi-tissue	Pritchard
rs4959976	hCT1641952.2	trans	multi-tissue	Pritchard
rs4959976	RPL31P45	cis	Liver	GTEx
rs4959976	RPL21P29	cis	Liver	GTEx
rs4959976	ENST00000274086	trans	multi-tissue	Pritchard
rs4959976	RPS19P3	cis	Liver	GTEx
rs4959976	RP1-153G14.3	trans	multi-tissue	Pritchard
rs4959976	RPL21	trans	multi-tissue	Pritchard
rs4959976	hCT1770124.1	trans	multi-tissue	Pritchard
rs4959976	XM_061997	trans	multi-tissue	Pritchard
rs4959976	GSDML	trans	multi-tissue	Pritchard
rs4959976	NACA3P	cis	Liver	GTEx
rs4959976	RPL21P3	cis	Liver	GTEx
rs4959976	ENST00000271101	trans	multi-tissue	Pritchard
rs4959976	ENST00000272885	trans	multi-tissue	Pritchard
rs4959976	ENST00000299187	trans	multi-tissue	Pritchard
rs4959976	RPL23AP76	cis	Liver	GTEx
rs4959976	ENST00000247196	trans	multi-tissue	Pritchard
rs4959976	hCT30316.2	trans	multi-tissue	Pritchard
rs4959976	XM_172479	trans	multi-tissue	Pritchard
rs4959976	C11orf60	cis	Liver	GTEx
rs4959976	GCN5L2	trans	multi-tissue	Pritchard
rs4959976	RPS8P4	cis	Liver	GTEx
rs4959976	hCT31218.3	trans	multi-tissue	Pritchard
rs4959976	RPLP0P6	cis	Liver	GTEx
rs4959976	ATP5G3	cis	Liver	GTEx
rs4959976	hCT2318732	trans	multi-tissue	Pritchard
rs4959976	RPL21P11	cis	Liver	GTEx
rs4959976	Contig20550_RC	trans	multi-tissue	Pritchard
rs4959976	TNNC1	cis	Liver	GTEx
rs4959976	hCT1821349.2	trans	multi-tissue	Pritchard
rs4959976	TNFRSF18	trans	multi-tissue	Pritchard
rs4959976	hCT1643605.2	trans	multi-tissue	Pritchard
rs4959976	RPL21P45	cis	Liver	GTEx
rs4959976	SPG7	cis	Liver	GTEx
rs4959976	NACAP1	cis	Liver	GTEx
rs4959976	RPL35A	cis	Liver	GTEx
rs4959976	TAZ	trans	multi-tissue	Pritchard
rs4959976	hCT1826921.1	trans	multi-tissue	Pritchard
rs4959976	RPL21P1	cis	Liver	GTEx
rs4959976	XM_062436	trans	multi-tissue	Pritchard
rs4959976	ENST00000300719	trans	multi-tissue	Pritchard
rs4959976	hCT1643114.2	trans	multi-tissue	Pritchard
rs4959976	hCT1646714.2	trans	multi-tissue	Pritchard
rs4959976	ENST00000298024	trans	multi-tissue	Pritchard
rs4959976	XM_065655	trans	multi-tissue	Pritchard
rs4959976	hCT1817470.1	trans	multi-tissue	Pritchard
rs4959976	RPL10AP6	cis	Liver	GTEx
rs4959976	hCT1639957.1	trans	multi-tissue	Pritchard
rs4959976	MEG3	cis	Liver	GTEx
rs4959976	ENST00000271513	trans	multi-tissue	Pritchard
rs4959976	WSB1	cis	Liver	GTEx
rs4959976	RPL14	cis	Liver	GTEx
rs4959976	ENST00000297066	trans	multi-tissue	Pritchard
rs4959976	RPS15AP19	cis	Liver	GTEx
rs4959976	NRXN3	cis	Liver	GTEx
rs4959976	WSB1	trans	multi-tissue	Pritchard
rs4959976	hCT1647869.3	trans	multi-tissue	Pritchard
rs4959976	RPS21P2	cis	Liver	GTEx
rs4959976	RPL23AP68	cis	Liver	GTEx
rs4959976	TNFRSF18	cis	Liver	GTEx
rs4959976	hCT1639962.2	trans	multi-tissue	Pritchard
rs4959976	ELMO1	cis	Liver	GTEx
rs4959976	RPS29	cis	Liver	GTEx
rs4959976	XM_116337	trans	multi-tissue	Pritchard
rs4959976	RPL14	trans	multi-tissue	Pritchard
rs4959976	RPL26P11	cis	Liver	GTEx
rs4959976	ENST00000294913	trans	multi-tissue	Pritchard
rs4959976	ENST00000301505	trans	multi-tissue	Pritchard
rs4959976	DNAJC7	cis	Liver	GTEx
rs4959976	RPL23	trans	multi-tissue	Pritchard
rs4959976	hCT1828316.2	trans	multi-tissue	Pritchard
rs4959976	RPL31P26	cis	Liver	GTEx
rs4959976	CYTH1	cis	Liver	GTEx
rs4959976	HELZ	cis	Liver	GTEx
rs4959976	XM_210628	trans	multi-tissue	Pritchard
rs4959976	RPS8	cis	Liver	GTEx
rs4959976	XM_210565	trans	multi-tissue	Pritchard
rs4959976	hCT15450.2	trans	multi-tissue	Pritchard
rs4959976	RPL27P10	cis	Liver	GTEx
rs4959976	RPL23AP65	cis	Liver	GTEx
rs4959976	hCT1960502.1	trans	multi-tissue	Pritchard
rs4959976	ENST00000226490	trans	multi-tissue	Pritchard
rs4959976	SNHG6	cis	Liver	GTEx
rs4959976	ENGASE	cis	Liver	GTEx
rs4959976	KCMF1	trans	multi-tissue	Pritchard
rs4959976	RPL31P50	cis	Liver	GTEx
rs4959976	hCT2272159	trans	multi-tissue	Pritchard
rs4959976	KLF3	cis	Liver	GTEx
rs4959976	ENST00000294808	trans	multi-tissue	Pritchard
rs4959976	hCT2329009	trans	multi-tissue	Pritchard
rs4959976	RPS15AP35	cis	Liver	GTEx
rs4959976	XM_062694	trans	multi-tissue	Pritchard
rs4959976	THBS3	cis	Liver	GTEx
rs4959976	RPL37	cis	Liver	GTEx
rs4959976	SNHG6	trans	multi-tissue	Pritchard
rs4959976	ADAMTS6	cis	Liver	GTEx
rs4959976	RPL31P10	cis	Liver	GTEx
rs4959976	DUSP12	cis	Liver	GTEx
rs4959976	NM_178516	trans	multi-tissue	Pritchard
rs4959976	TIAL1	trans	multi-tissue	Pritchard
rs4959976	KCMF1	cis	Liver	GTEx
rs4959976	hCT1639898.2	trans	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4442600-4447400	Weak transcription	NHLF	lung
2	chr6:4442600-4449600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:4442800-4446200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:4442800-4446400	Weak transcription	Placenta	Placenta
5	chr6:4442800-4447400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:4442800-4447400	Weak transcription	HSMMtube	muscle
7	chr6:4442800-4459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:4443000-4446600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Variant report

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