Variant report

Variant	rs4964461
Chromosome Location	chr12:106719914-106719915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106717961..106720483-chr12:106738715..106741683,2	K562	blood:
2	chr12:106714973..106717820-chr12:106718237..106720726,2	MCF-7	breast:
3	chr12:106718967..106721927-chr12:106723335..106725392,2	K562	blood:
4	chr12:106718982..106720879-chr12:106723793..106725345,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166046	Chromatin interaction

rs_ID	r²[population]
rs4964174	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs61940298	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61940338	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
2	chr12:106703000-106722800	Weak transcription	Fetal Brain Male	brain
3	chr12:106704200-106729400	Weak transcription	NHLF	lung
4	chr12:106704200-106729800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:106704600-106724400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:106704800-106726800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr12:106705400-106731600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:106705800-106725400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:106706000-106727800	Strong transcription	Placenta	Placenta
13	chr12:106707800-106721000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:106707800-106721800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr12:106707800-106726400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr12:106707800-106738800	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:106707800-106738800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:106708000-106720600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr12:106708000-106720600	Strong transcription	Lung	lung
20	chr12:106708000-106720800	Strong transcription	Rectal Smooth Muscle	rectum
21	chr12:106708000-106721400	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr12:106708000-106721600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:106708000-106721600	Strong transcription	Stomach Smooth Muscle	stomach
24	chr12:106708000-106723400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:106708000-106726800	Strong transcription	Fetal Intestine Large	intestine
26	chr12:106708000-106728200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
28	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr12:106708200-106721200	Strong transcription	Ovary	ovary
30	chr12:106708200-106721200	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr12:106708200-106721400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr12:106708400-106720800	Strong transcription	Brain Anterior Caudate	brain
33	chr12:106708400-106721200	Strong transcription	Primary B cells from cord blood	blood
34	chr12:106708400-106723400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:106708400-106728000	Strong transcription	Thymus	Thymus
36	chr12:106708600-106720600	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr12:106708600-106720800	Strong transcription	Brain Hippocampus Middle	brain
38	chr12:106708600-106727000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr12:106708800-106720800	Strong transcription	Brain Cingulate Gyrus	brain
40	chr12:106709000-106720600	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr12:106709000-106721400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr12:106709200-106720400	Strong transcription	Brain Substantia Nigra	brain
43	chr12:106709400-106720800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr12:106710000-106720400	Weak transcription	Osteobl	bone
45	chr12:106710000-106729800	Weak transcription	Hela-S3	cervix
46	chr12:106710200-106721400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr12:106710400-106725400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr12:106710600-106720800	Strong transcription	Fetal Thymus	thymus
49	chr12:106711200-106720200	Strong transcription	Aorta	Aorta
50	chr12:106711200-106721000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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