Variant report

Variant	rs61940298
Chromosome Location	chr12:106683798-106683799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4964174	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4964461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61940338	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794382	chr12:106679812-106699151	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106678600-106688800	Weak transcription	Lung	lung
2	chr12:106680000-106695200	Weak transcription	Right Atrium	heart
3	chr12:106680400-106684600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106682000-106684600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:106682400-106683800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:106682600-106683800	Enhancers	Esophagus	oesophagus
7	chr12:106682800-106685200	Weak transcription	Fetal Intestine Small	intestine
8	chr12:106683000-106685000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:106683000-106685400	Weak transcription	Fetal Intestine Large	intestine
10	chr12:106683200-106684400	Weak transcription	Stomach Mucosa	stomach
11	chr12:106683200-106684600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:106683200-106684600	Weak transcription	A549	lung
13	chr12:106683200-106693000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:106683400-106684400	Weak transcription	K562	blood
15	chr12:106683400-106685400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:106683400-106689600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:106683400-106689800	Weak transcription	Hela-S3	cervix
18	chr12:106683600-106684600	Weak transcription	HepG2	liver
19	chr12:106683600-106689800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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