Variant report

Variant	rs61940338
Chromosome Location	chr12:106730445-106730446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106729650..106732454-chr12:106734851..106738258,4	MCF-7	breast:

rs_ID	r²[population]
rs4964174	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4964461	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61940298	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
2	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr12:106705400-106731600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:106707800-106738800	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:106707800-106738800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
9	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr12:106712000-106732600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:106713400-106741600	Weak transcription	Small Intestine	intestine
12	chr12:106716400-106735400	Weak transcription	Right Atrium	heart
13	chr12:106716800-106735400	Weak transcription	Esophagus	oesophagus
14	chr12:106716800-106736000	Weak transcription	Gastric	stomach
15	chr12:106717000-106735600	Weak transcription	HSMMtube	muscle
16	chr12:106719600-106735400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:106720200-106735400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:106720200-106736000	Weak transcription	Fetal Intestine Small	intestine
19	chr12:106720200-106736200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:106720800-106730800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:106720800-106738200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr12:106721200-106731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:106721400-106733600	Weak transcription	Fetal Heart	heart
24	chr12:106722000-106731000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr12:106722800-106735600	Weak transcription	Pancreas	Pancrea
26	chr12:106723200-106738000	Weak transcription	Fetal Brain Male	brain
27	chr12:106723400-106735400	Weak transcription	Colonic Mucosa	Colon
28	chr12:106723400-106736000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:106723400-106736400	Weak transcription	Fetal Stomach	stomach
30	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
31	chr12:106724000-106736600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr12:106724000-106742600	Strong transcription	Primary B cells from cord blood	blood
33	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
34	chr12:106724200-106731000	Strong transcription	Brain Hippocampus Middle	brain
35	chr12:106724200-106736800	Weak transcription	Brain Germinal Matrix	brain
36	chr12:106724600-106731400	Strong transcription	Left Ventricle	heart
37	chr12:106724600-106735200	Weak transcription	Right Ventricle	heart
38	chr12:106724600-106735600	Weak transcription	Spleen	Spleen
39	chr12:106724800-106731600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr12:106725600-106731800	Strong transcription	Brain Anterior Caudate	brain
41	chr12:106725800-106732400	Strong transcription	Brain Substantia Nigra	brain
42	chr12:106725800-106735000	Weak transcription	Aorta	Aorta
43	chr12:106725800-106735400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr12:106726000-106735200	Weak transcription	Lung	lung
45	chr12:106726000-106735600	Weak transcription	Ovary	ovary
46	chr12:106726200-106731400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr12:106726400-106735800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr12:106726800-106730800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr12:106726800-106735000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr12:106726800-106735400	Weak transcription	Fetal Muscle Leg	muscle

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