Variant report

Variant	rs496740
Chromosome Location	chrX:154557160-154557161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154443547..154446264-chrX:154555865..154558025,2	K562	blood:
2	chrX:154556106..154557825-chrX:154560786..154562528,2	K562	blood:
3	chrX:154555033..154557825-chrX:154560328..154562528,2	K562	blood:

Variant related genes	Relation type
ENSG00000155959	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11156600	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs11887	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs12013168	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1393999	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs3105275	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3105276	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs35296872	0.91[CHB][hapmap]
rs480210	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs492622	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs499428	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs499669	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs504984	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs507127	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs516396	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs519641	1.00[CHB][hapmap]
rs520145	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs523614	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs524609	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs525161	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs533001	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs542899	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs543054	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs544582	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs547724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs559165	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs568396	1.00[CHB][hapmap]
rs573189	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs573572	1.00[CHB][hapmap]
rs5940510	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs5983697	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs5983764	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs5987090	0.80[JPT][hapmap]
rs6567813	0.91[CHB][hapmap]
rs782769	1.00[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916671	chrX:154418093-154560374	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv532966	chrX:154418093-154721378	Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv29972	chrX:154418093-154929412	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv532965	chrX:154418093-155226096	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv532967	chrX:154418093-155252027	Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv534387	chrX:154455491-154560375	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv3329324	chrX:154552658-154558106	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3362547	chrX:154552758-154557906	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154556400-154560000	Weak transcription	K562	blood

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