Variant report

Variant	rs6567813
Chromosome Location	chrX:154423133-154423134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chrX:154423024-154423229	A549	lung:	n/a	n/a

Variant related genes	Relation type
VBP1	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11156600	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap]
rs11887	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs12013168	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1393999	0.91[CHB][hapmap]
rs3105275	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs3105276	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs35296872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[LWK][hapmap];0.89[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap]
rs480210	0.91[CHB][hapmap];0.91[CHD][hapmap];0.84[MEX][hapmap]
rs4893113	0.91[CHB][hapmap]
rs492622	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs496740	0.91[CHB][hapmap]
rs499428	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs499669	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs504984	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs507127	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs516396	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs519641	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs520145	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs523614	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs524609	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs525161	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs533001	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs542899	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs543054	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs544582	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs547724	0.91[CHB][hapmap];0.96[CHD][hapmap];0.94[MEX][hapmap]
rs559165	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs568396	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs573189	0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[MEX][hapmap]
rs573572	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs5983697	1.00[CHB][hapmap]
rs5983764	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs5987090	0.82[CHB][hapmap]
rs782769	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916671	chrX:154418093-154560374	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv532966	chrX:154418093-154721378	Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv29972	chrX:154418093-154929412	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv532965	chrX:154418093-155226096	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv532967	chrX:154418093-155252027	Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154418800-154425200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chrX:154421200-154423200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chrX:154422400-154426600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:154423000-154423400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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