Variant report

Variant	rs4978557
Chromosome Location	chr9:116635490-116635491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10817529	0.89[ASN][1000 genomes]
rs10981982	0.84[ASN][1000 genomes]
rs10981990	0.82[ASN][1000 genomes]
rs1999203	0.81[JPT][hapmap]
rs61533724	0.81[ASN][1000 genomes]
rs7852347	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116634400-116636000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:116634400-116636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:116634400-116637800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:116634600-116635800	Enhancers	NHEK	skin
5	chr9:116635200-116636600	Enhancers	HMEC	breast
6	chr9:116635400-116637800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr9:116635400-116637800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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