Variant report

Variant	rs1999203
Chromosome Location	chr9:116652328-116652329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116646398..116649591-chr9:116652096..116654192,3	K562	blood:
2	chr9:116651215..116653821-chr9:116654616..116657370,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10817521	0.81[MEX][hapmap]
rs16910261	0.81[MEX][hapmap]
rs16910363	0.81[AMR][1000 genomes]
rs4978557	0.81[JPT][hapmap]
rs4978558	0.83[AMR][1000 genomes]
rs4979289	0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4979304	0.90[MEX][hapmap]
rs58148408	0.83[AMR][1000 genomes]
rs60615197	0.83[AMR][1000 genomes]
rs871807	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:116639200-116663400	Weak transcription	Gastric	stomach
3	chr9:116649000-116652800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:116649000-116653000	Weak transcription	Brain Anterior Caudate	brain
5	chr9:116649200-116658000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:116649600-116652800	Weak transcription	Fetal Lung	lung
7	chr9:116649600-116660000	Weak transcription	Small Intestine	intestine
8	chr9:116649800-116652800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:116649800-116652800	Weak transcription	K562	blood
10	chr9:116649800-116655000	Weak transcription	Stomach Mucosa	stomach
11	chr9:116649800-116663800	Weak transcription	HSMMtube	muscle
12	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:116650000-116652800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:116650000-116653800	Weak transcription	Osteobl	bone
15	chr9:116650200-116652800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:116650200-116657600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:116650200-116657800	Weak transcription	HUVEC	blood vessel
18	chr9:116650400-116653200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:116650600-116652600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:116650600-116652800	Strong transcription	A549	lung
21	chr9:116650600-116652800	Weak transcription	NHDF-Ad	bronchial
22	chr9:116650600-116662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:116650800-116652400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr9:116650800-116652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:116651000-116652600	Weak transcription	Fetal Brain Female	brain
26	chr9:116651000-116652800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:116651000-116652800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:116651000-116654200	Weak transcription	Liver	Liver
29	chr9:116651000-116654800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:116651000-116662600	Weak transcription	Fetal Intestine Small	intestine
31	chr9:116651000-116662800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:116651000-116668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:116651200-116652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:116651200-116653200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:116651200-116663200	Weak transcription	Fetal Stomach	stomach
36	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:116651400-116652800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:116651600-116653000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:116651600-116655400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:116651800-116652800	Weak transcription	Fetal Muscle Leg	muscle
41	chr9:116651800-116653200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr9:116651800-116654200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:116651800-116654600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:116651800-116654600	Strong transcription	HSMM	muscle
45	chr9:116651800-116655400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr9:116652000-116652800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:116652000-116653200	ZNF genes & repeats	Fetal Kidney	kidney
48	chr9:116652000-116653800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:116652000-116655200	Weak transcription	Pancreas	Pancrea
50	chr9:116652200-116655200	Weak transcription	Ovary	ovary

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