Variant report

Variant	rs10817521
Chromosome Location	chr9:116557588-116557589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116550956..116554977-chr9:116555301..116559314,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000211556	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10122669	0.86[ASN][1000 genomes]
rs10817523	0.85[AMR][1000 genomes]
rs10981930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981945	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981983	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10981988	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10981990	0.83[AMR][1000 genomes]
rs12551439	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1326324	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1536967	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1571033	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1590887	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909454	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16910261	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.89[AMR][1000 genomes]
rs16910363	0.85[AMR][1000 genomes]
rs1999203	0.81[MEX][hapmap]
rs35929232	0.86[AMR][1000 genomes]
rs4978558	0.86[AMR][1000 genomes]
rs4979304	0.90[MEX][hapmap]
rs58148408	0.86[AMR][1000 genomes]
rs58242755	0.81[AMR][1000 genomes]
rs60615197	0.86[AMR][1000 genomes]
rs60678033	0.81[AMR][1000 genomes]
rs7030473	0.87[ASN][1000 genomes]
rs7032965	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7046380	0.87[ASN][1000 genomes]
rs7046526	0.87[ASN][1000 genomes]
rs7046799	0.87[ASN][1000 genomes]
rs871807	0.82[MEX][hapmap]
rs913078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9777523	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116555800-116557800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116556400-116558000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr9:116557000-116559800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:116557000-116560200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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