Variant report

Variant	rs58242755
Chromosome Location	chr9:116660143-116660144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116657492..116660470-chr9:116661016..116662633,2	K562	blood:
2	chr9:116658311..116661574-chr9:116662658..116666570,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10817521	0.81[AMR][1000 genomes]
rs10981930	0.81[AMR][1000 genomes]
rs10981945	0.85[AMR][1000 genomes]
rs10981983	0.85[AMR][1000 genomes]
rs10981988	0.80[AMR][1000 genomes]
rs12554824	0.84[AMR][1000 genomes]
rs1536967	0.85[AMR][1000 genomes]
rs1590887	0.85[AMR][1000 genomes]
rs16910261	0.81[AMR][1000 genomes]
rs16910363	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16910491	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16910655	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16910725	0.81[AMR][1000 genomes]
rs1807280	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2150013	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2150016	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35075864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4978558	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4979299	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4979304	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4979305	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58148408	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60615197	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60678033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61033589	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62559169	0.84[ASN][1000 genomes]
rs7032965	0.85[AMR][1000 genomes]
rs7862623	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7866488	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7867159	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs871807	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9777523	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116663400	Weak transcription	Gastric	stomach
2	chr9:116649800-116663800	Weak transcription	HSMMtube	muscle
3	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:116650600-116662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:116651000-116662600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:116651000-116662800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:116651000-116668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:116651200-116663200	Weak transcription	Fetal Stomach	stomach
9	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:116652200-116668400	Weak transcription	NH-A	brain
11	chr9:116653000-116663800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:116653200-116660400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:116653200-116668400	Weak transcription	NHLF	lung
14	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
16	chr9:116653400-116669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:116653800-116665400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:116653800-116669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:116654000-116661400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:116654400-116665400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:116654400-116668200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:116654600-116663600	Weak transcription	HSMM	muscle
24	chr9:116655400-116660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:116655400-116661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:116655400-116664000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr9:116655600-116661200	Weak transcription	Pancreas	Pancrea
28	chr9:116655600-116663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:116655600-116663400	Weak transcription	Ovary	ovary
30	chr9:116657800-116660600	Enhancers	HUVEC	blood vessel
31	chr9:116658000-116668400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:116658200-116663200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:116658200-116663400	Weak transcription	NHDF-Ad	bronchial
34	chr9:116658800-116663400	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:116659400-116685400	Weak transcription	A549	lung
36	chr9:116659600-116663000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:116660000-116660200	Enhancers	Small Intestine	intestine

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