Variant report

Variant	rs16910725
Chromosome Location	chr9:116700096-116700097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12115203	1.00[YRI][hapmap]
rs12115208	1.00[YRI][hapmap]
rs12115526	1.00[YRI][hapmap]
rs12115719	1.00[YRI][hapmap]
rs12554824	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16910491	0.89[AMR][1000 genomes]
rs16910655	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16910836	1.00[YRI][hapmap]
rs16910937	1.00[YRI][hapmap]
rs16910941	1.00[YRI][hapmap]
rs16910946	1.00[YRI][hapmap]
rs16936489	1.00[YRI][hapmap]
rs2150013	0.83[AMR][1000 genomes]
rs2150016	0.89[AMR][1000 genomes]
rs4979299	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4979304	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4979305	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58242755	0.81[AMR][1000 genomes]
rs60678033	0.81[AMR][1000 genomes]
rs61033589	0.89[AMR][1000 genomes]
rs7862623	0.83[AMR][1000 genomes]
rs7866488	0.83[AMR][1000 genomes]
rs7867159	0.83[AMR][1000 genomes]
rs871807	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116691400-116704200	Weak transcription	HSMM	muscle
2	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:116692000-116704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:116692000-116719400	Weak transcription	HMEC	breast
5	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:116692400-116717200	Weak transcription	A549	lung
7	chr9:116693200-116705400	Weak transcription	Psoas Muscle	Psoas
8	chr9:116693600-116703400	Weak transcription	NH-A	brain
9	chr9:116693600-116704200	Weak transcription	Fetal Lung	lung
10	chr9:116693800-116714200	Weak transcription	Fetal Kidney	kidney
11	chr9:116694200-116704200	Weak transcription	Fetal Stomach	stomach
12	chr9:116695600-116711600	Weak transcription	Liver	Liver
13	chr9:116695800-116704200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:116695800-116705400	Weak transcription	Lung	lung
15	chr9:116695800-116708800	Weak transcription	Pancreas	Pancrea
16	chr9:116695800-116716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:116696000-116703800	Weak transcription	NHLF	lung
18	chr9:116696000-116714800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:116696200-116701200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:116696200-116719800	Weak transcription	Gastric	stomach
21	chr9:116697600-116705400	Weak transcription	Spleen	Spleen
22	chr9:116697600-116715000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:116698200-116703000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:116698200-116703000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr9:116698200-116708200	Weak transcription	Fetal Intestine Small	intestine
26	chr9:116698400-116703800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:116698400-116708800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:116698600-116704000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:116698600-116707200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:116699000-116700600	Weak transcription	Ovary	ovary
31	chr9:116699400-116700400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr9:116700000-116702400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:116700000-116703000	Weak transcription	HUVEC	blood vessel

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