Variant report

Variant	rs16910941
Chromosome Location	chr9:116713986-116713987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116637390..116639805-chr9:116711713..116714595,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10156410	1.00[AMR][1000 genomes]
rs11792006	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12115203	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115208	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115526	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115719	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910725	1.00[YRI][hapmap]
rs16910836	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910937	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910946	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936489	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56807995	1.00[AMR][1000 genomes]
rs6478053	1.00[MEX][hapmap]
rs7034053	1.00[JPT][hapmap]
rs73554406	1.00[AMR][1000 genomes]
rs814683	1.00[MEX][hapmap]
rs814684	1.00[MEX][hapmap]
rs814694	1.00[MEX][hapmap]
rs871807	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs9942859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116692000-116719400	Weak transcription	HMEC	breast
2	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116692400-116717200	Weak transcription	A549	lung
4	chr9:116693800-116714200	Weak transcription	Fetal Kidney	kidney
5	chr9:116695800-116716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:116696000-116714800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:116696200-116719800	Weak transcription	Gastric	stomach
8	chr9:116697600-116715000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:116703600-116714600	Weak transcription	NH-A	brain
10	chr9:116703600-116719800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:116703800-116716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:116703800-116716600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:116704200-116715400	Weak transcription	NHLF	lung
14	chr9:116704400-116714400	Weak transcription	NHDF-Ad	bronchial
15	chr9:116704400-116714600	Weak transcription	HSMMtube	muscle
16	chr9:116704400-116714600	Weak transcription	Osteobl	bone
17	chr9:116704400-116717000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:116704600-116716400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:116704800-116714600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:116705200-116714000	Weak transcription	HUVEC	blood vessel
21	chr9:116705400-116714600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:116705800-116715800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:116705800-116716200	Weak transcription	Right Atrium	heart
24	chr9:116706200-116716400	Weak transcription	Aorta	Aorta
25	chr9:116706200-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:116706800-116717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:116707800-116714600	Weak transcription	HSMM	muscle
28	chr9:116707800-116717000	Weak transcription	Fetal Lung	lung
29	chr9:116708600-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:116709000-116720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:116709200-116714000	Weak transcription	Pancreas	Pancrea
33	chr9:116709200-116716000	Weak transcription	Lung	lung
34	chr9:116709200-116716800	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:116710400-116719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:116710800-116723000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:116712000-116714600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:116712000-116719800	Weak transcription	Fetal Intestine Small	intestine
39	chr9:116712200-116717000	Weak transcription	Liver	Liver
40	chr9:116712800-116714600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
42	chr9:116713000-116715000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:116713000-116716000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr9:116713000-116717400	Weak transcription	Fetal Stomach	stomach
45	chr9:116713000-116719400	Weak transcription	Stomach Mucosa	stomach
46	chr9:116713200-116719800	Weak transcription	Spleen	Spleen
47	chr9:116713400-116716400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr9:116713400-116719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:116713800-116714800	Enhancers	Ovary	ovary

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