Variant report

Variant	rs56807995
Chromosome Location	chr9:116681770-116681771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116637842..116639992-chr9:116680566..116683236,2	MCF-7	breast:
2	chr9:116672204..116673928-chr9:116680412..116682576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10156410	1.00[AMR][1000 genomes]
rs12115203	1.00[AMR][1000 genomes]
rs12115208	1.00[AMR][1000 genomes]
rs12115526	1.00[AMR][1000 genomes]
rs12115719	1.00[AMR][1000 genomes]
rs16910836	1.00[AMR][1000 genomes]
rs16910937	1.00[AMR][1000 genomes]
rs16910941	1.00[AMR][1000 genomes]
rs16910946	1.00[AMR][1000 genomes]
rs16910951	1.00[AMR][1000 genomes]
rs16910963	1.00[AMR][1000 genomes]
rs16936489	1.00[AMR][1000 genomes]
rs73554406	1.00[AMR][1000 genomes]
rs9942859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116659400-116685400	Weak transcription	A549	lung
2	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116669400-116683000	Weak transcription	Osteobl	bone
7	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:116669800-116683600	Weak transcription	HUVEC	blood vessel
9	chr9:116672000-116682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:116672600-116684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:116672800-116681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:116674600-116682000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:116674800-116681800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:116675200-116684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:116675400-116683200	Weak transcription	NHDF-Ad	bronchial
17	chr9:116675400-116684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:116675600-116682000	Weak transcription	Brain Anterior Caudate	brain
19	chr9:116675600-116684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:116675800-116683400	Weak transcription	NHLF	lung
21	chr9:116675800-116683600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:116675800-116684600	Weak transcription	Esophagus	oesophagus
23	chr9:116675800-116686000	Weak transcription	Colonic Mucosa	Colon
24	chr9:116675800-116691800	Weak transcription	Lung	lung
25	chr9:116676000-116682400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:116676000-116683200	Weak transcription	Gastric	stomach
27	chr9:116676000-116684800	Weak transcription	Fetal Kidney	kidney
28	chr9:116676200-116688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:116676400-116684200	Weak transcription	HSMMtube	muscle
30	chr9:116676400-116685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:116676600-116682000	Weak transcription	Liver	Liver
32	chr9:116677600-116683400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:116679000-116681800	Weak transcription	Fetal Intestine Large	intestine
34	chr9:116679000-116682000	Weak transcription	Fetal Intestine Small	intestine
35	chr9:116679200-116684400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:116679200-116689600	Weak transcription	HSMM	muscle
37	chr9:116679400-116686800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
39	chr9:116680400-116681800	Weak transcription	Fetal Stomach	stomach
40	chr9:116680400-116682600	Enhancers	Fetal Brain Female	brain
41	chr9:116680600-116682800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:116680800-116682800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr9:116680800-116683000	Enhancers	Fetal Brain Male	brain
44	chr9:116681000-116682200	Enhancers	Brain Angular Gyrus	brain
45	chr9:116681000-116682400	Enhancers	Aorta	Aorta
46	chr9:116681000-116682600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:116681000-116682600	Enhancers	Ovary	ovary
48	chr9:116681000-116682600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:116681000-116683400	Enhancers	Fetal Muscle Leg	muscle
50	chr9:116681000-116683400	Enhancers	Skeletal Muscle Male	skeletal muscle

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