Variant report

Variant	rs16910946
Chromosome Location	chr9:116715553-116715554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116714888..116717726-chr9:116720128..116722306,2	K562	blood:
2	chr9:116714751..116717397-chr9:116717561..116719359,3	MCF-7	breast:
3	chr9:116708924..116711614-chr9:116714873..116716503,2	MCF-7	breast:
4	chr9:116715151..116717735-chr9:116720132..116722087,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10156410	1.00[AMR][1000 genomes]
rs11792006	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12115203	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115208	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115526	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115719	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910725	1.00[YRI][hapmap]
rs16910836	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910937	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910941	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936489	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56807995	1.00[AMR][1000 genomes]
rs6478053	1.00[MEX][hapmap]
rs7034053	1.00[JPT][hapmap]
rs73554406	1.00[AMR][1000 genomes]
rs814683	1.00[MEX][hapmap]
rs814684	1.00[MEX][hapmap]
rs814694	1.00[MEX][hapmap]
rs871807	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs9942859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116692000-116719400	Weak transcription	HMEC	breast
2	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116692400-116717200	Weak transcription	A549	lung
4	chr9:116695800-116716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:116696200-116719800	Weak transcription	Gastric	stomach
6	chr9:116703600-116719800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:116703800-116716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:116703800-116716600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:116704400-116717000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:116704600-116716400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:116705800-116715800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:116705800-116716200	Weak transcription	Right Atrium	heart
13	chr9:116706200-116716400	Weak transcription	Aorta	Aorta
14	chr9:116706200-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:116706800-116717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:116707800-116717000	Weak transcription	Fetal Lung	lung
17	chr9:116708600-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:116709000-116720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:116709200-116716000	Weak transcription	Lung	lung
21	chr9:116709200-116716800	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:116710400-116719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:116710800-116723000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:116712000-116719800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:116712200-116717000	Weak transcription	Liver	Liver
26	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
27	chr9:116713000-116716000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr9:116713000-116717400	Weak transcription	Fetal Stomach	stomach
29	chr9:116713000-116719400	Weak transcription	Stomach Mucosa	stomach
30	chr9:116713200-116719800	Weak transcription	Spleen	Spleen
31	chr9:116713400-116716400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:116713400-116719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:116714400-116716800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:116714400-116721200	Enhancers	NHDF-Ad	bronchial
35	chr9:116714600-116716600	Weak transcription	Fetal Kidney	kidney
36	chr9:116714600-116717200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:116714600-116717200	Enhancers	HSMMtube	muscle
38	chr9:116714600-116717400	Enhancers	HSMM	muscle
39	chr9:116714600-116719200	Enhancers	NH-A	brain
40	chr9:116714600-116719600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:116714600-116720400	Enhancers	Osteobl	bone
42	chr9:116714600-116721600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:116714600-116722400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:116714800-116716000	Weak transcription	Left Ventricle	heart
45	chr9:116714800-116716000	Weak transcription	Ovary	ovary
46	chr9:116714800-116716800	Weak transcription	Pancreas	Pancrea
47	chr9:116714800-116717400	Enhancers	Muscle Satellite Cultured Cells	--
48	chr9:116715000-116721000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:116715000-116721200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr9:116715400-116715800	Flanking Active TSS	HUVEC	blood vessel

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