Variant report

Variant	rs871807
Chromosome Location	chr9:116698630-116698631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116690832..116694105-chr9:116696668..116699935,3	K562	blood:
2	chr9:116697012..116698991-chr9:116710633..116712599,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10817521	0.82[MEX][hapmap]
rs12115203	1.00[YRI][hapmap]
rs12115208	1.00[YRI][hapmap]
rs12115526	1.00[YRI][hapmap]
rs12115719	1.00[YRI][hapmap]
rs12554824	0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910261	0.82[MEX][hapmap]
rs16910363	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs16910491	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16910655	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16910725	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16910836	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16910937	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16910941	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16910946	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16936489	1.00[YRI][hapmap]
rs1807280	0.92[ASN][1000 genomes]
rs1999203	0.81[MEX][hapmap]
rs2150013	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2150016	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35075864	0.91[ASN][1000 genomes]
rs4978558	0.84[ASN][1000 genomes]
rs4979299	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4979304	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4979305	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58148408	0.85[ASN][1000 genomes]
rs58242755	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60615197	0.85[ASN][1000 genomes]
rs60678033	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61033589	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7862623	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7866488	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7867159	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116691400-116704200	Weak transcription	HSMM	muscle
2	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:116692000-116704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:116692000-116719400	Weak transcription	HMEC	breast
5	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:116692400-116717200	Weak transcription	A549	lung
7	chr9:116693200-116705400	Weak transcription	Psoas Muscle	Psoas
8	chr9:116693600-116703400	Weak transcription	NH-A	brain
9	chr9:116693600-116704200	Weak transcription	Fetal Lung	lung
10	chr9:116693800-116714200	Weak transcription	Fetal Kidney	kidney
11	chr9:116694200-116704200	Weak transcription	Fetal Stomach	stomach
12	chr9:116695600-116711600	Weak transcription	Liver	Liver
13	chr9:116695800-116699400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:116695800-116704200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:116695800-116705400	Weak transcription	Lung	lung
16	chr9:116695800-116708800	Weak transcription	Pancreas	Pancrea
17	chr9:116695800-116716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:116696000-116703800	Weak transcription	NHLF	lung
19	chr9:116696000-116714800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:116696200-116699400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:116696200-116699400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr9:116696200-116701200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:116696200-116719800	Weak transcription	Gastric	stomach
24	chr9:116697000-116699000	Enhancers	Ovary	ovary
25	chr9:116697600-116705400	Weak transcription	Spleen	Spleen
26	chr9:116697600-116715000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:116698200-116703000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:116698200-116703000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:116698200-116708200	Weak transcription	Fetal Intestine Small	intestine
30	chr9:116698400-116703800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:116698400-116708800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:116698600-116700000	Enhancers	HUVEC	blood vessel
33	chr9:116698600-116704000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:116698600-116707200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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