Variant report

Variant	rs16910655
Chromosome Location	chr9:116691933-116691934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116690832..116694105-chr9:116696668..116699935,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12554824	0.90[JPT][hapmap];0.93[AMR][1000 genomes]
rs16910363	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16910491	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16910725	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1807280	0.94[ASN][1000 genomes]
rs2150013	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2150016	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35075864	0.92[ASN][1000 genomes]
rs4978558	0.85[ASN][1000 genomes]
rs4979299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4979304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4979305	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55783530	0.83[AFR][1000 genomes]
rs58148408	0.87[ASN][1000 genomes]
rs58242755	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60615197	0.87[ASN][1000 genomes]
rs60678033	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61033589	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73658307	0.82[AFR][1000 genomes]
rs7862623	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7866488	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7867159	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs871807	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:116686000-116692000	Weak transcription	Fetal Heart	heart
3	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney
4	chr9:116689800-116692000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116690000-116692400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:116690000-116692400	ZNF genes & repeats	A549	lung
7	chr9:116690800-116692000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:116690800-116692800	Weak transcription	Fetal Lung	lung
9	chr9:116691200-116692000	ZNF genes & repeats	NHLF	lung
10	chr9:116691200-116693000	Enhancers	K562	blood
11	chr9:116691200-116694200	Enhancers	HUVEC	blood vessel
12	chr9:116691400-116692000	ZNF genes & repeats	HMEC	breast
13	chr9:116691400-116692200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:116691400-116692400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:116691400-116692400	Enhancers	Gastric	stomach
16	chr9:116691400-116704200	Weak transcription	HSMM	muscle
17	chr9:116691600-116692200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:116691600-116692600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:116691600-116692600	Enhancers	Aorta	Aorta
20	chr9:116691600-116692600	Enhancers	Liver	Liver
21	chr9:116691600-116692600	Enhancers	Stomach Mucosa	stomach
22	chr9:116691600-116692600	Enhancers	NHDF-Ad	bronchial
23	chr9:116691600-116692800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:116691600-116693200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:116691600-116693200	Enhancers	Osteobl	bone
26	chr9:116691600-116695800	Enhancers	Pancreas	Pancrea
27	chr9:116691800-116692000	Enhancers	Lung	lung
28	chr9:116691800-116692600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:116691800-116692600	Enhancers	Hela-S3	cervix
30	chr9:116691800-116693000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:116691800-116693000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:116691800-116693000	Enhancers	Right Atrium	heart
33	chr9:116691800-116693400	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr9:116691800-116693600	Enhancers	NH-A	brain
35	chr9:116691800-116696200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:116691800-116696600	Enhancers	Ovary	ovary
37	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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