Variant report

Variant	rs4979304
Chromosome Location	chr9:116692683-116692684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116690832..116694105-chr9:116696668..116699935,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10817521	0.90[MEX][hapmap]
rs12554824	0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910261	0.80[CHD][hapmap];0.91[MEX][hapmap]
rs16910363	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16910491	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16910655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910725	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17203945	1.00[LWK][hapmap]
rs1807280	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1999203	0.90[MEX][hapmap]
rs2150013	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2150016	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35075864	0.92[ASN][1000 genomes]
rs4978558	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4979299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58148408	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58242755	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60615197	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60678033	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61033589	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7862623	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7866488	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7867159	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs871807	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney
2	chr9:116690800-116692800	Weak transcription	Fetal Lung	lung
3	chr9:116691200-116693000	Enhancers	K562	blood
4	chr9:116691200-116694200	Enhancers	HUVEC	blood vessel
5	chr9:116691400-116704200	Weak transcription	HSMM	muscle
6	chr9:116691600-116692800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:116691600-116693200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:116691600-116693200	Enhancers	Osteobl	bone
9	chr9:116691600-116695800	Enhancers	Pancreas	Pancrea
10	chr9:116691800-116693000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:116691800-116693000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:116691800-116693000	Enhancers	Right Atrium	heart
13	chr9:116691800-116693400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr9:116691800-116693600	Enhancers	NH-A	brain
15	chr9:116691800-116696200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:116691800-116696600	Enhancers	Ovary	ovary
17	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:116692000-116692800	Weak transcription	Lung	lung
19	chr9:116692000-116693200	Enhancers	NHLF	lung
20	chr9:116692000-116693600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:116692000-116694400	Enhancers	Fetal Heart	heart
22	chr9:116692000-116695000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:116692000-116695400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:116692000-116704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:116692000-116719400	Weak transcription	HMEC	breast
26	chr9:116692200-116693200	Enhancers	Psoas Muscle	Psoas
27	chr9:116692200-116693600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:116692200-116693800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:116692400-116692800	Weak transcription	Gastric	stomach
30	chr9:116692400-116693600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr9:116692400-116693800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:116692400-116717200	Weak transcription	A549	lung
34	chr9:116692600-116693400	Weak transcription	Aorta	Aorta
35	chr9:116692600-116694200	Weak transcription	Stomach Mucosa	stomach
36	chr9:116692600-116694800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:116692600-116694800	Weak transcription	NHDF-Ad	bronchial
38	chr9:116692600-116695200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:116692600-116695200	Weak transcription	Adipose Nuclei	Adipose
40	chr9:116692600-116695200	Weak transcription	Liver	Liver
41	chr9:116692600-116695600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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