Variant report

Variant	rs7867159
Chromosome Location	chr9:116674285-116674286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116667918..116669920-chr9:116674262..116678050,3	MCF-7	breast:
2	chr9:116666788..116668683-chr9:116673616..116675696,2	MCF-7	breast:
3	chr9:116637548..116639400-chr9:116672960..116675906,2	MCF-7	breast:
4	chr9:116666574..116671426-chr9:116673853..116679155,7	K562	blood:
5	chr9:116672519..116674297-chr9:116675403..116677434,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11790976	0.89[EUR][1000 genomes]
rs11791785	0.85[EUR][1000 genomes]
rs11791817	0.85[EUR][1000 genomes]
rs11792006	0.85[EUR][1000 genomes]
rs11792694	0.89[EUR][1000 genomes]
rs12554824	0.86[AMR][1000 genomes]
rs16910363	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16910491	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910517	0.89[EUR][1000 genomes]
rs16910570	0.89[EUR][1000 genomes]
rs16910655	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16910725	0.83[AMR][1000 genomes]
rs16910855	0.85[EUR][1000 genomes]
rs16910950	0.85[EUR][1000 genomes]
rs1807280	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150013	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2150016	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35075864	0.98[ASN][1000 genomes]
rs35678978	0.82[EUR][1000 genomes]
rs4287014	0.82[EUR][1000 genomes]
rs4978558	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4979299	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4979304	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4979305	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58148408	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58242755	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60615197	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60678033	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61033589	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62559169	0.84[ASN][1000 genomes]
rs73554413	0.82[EUR][1000 genomes]
rs73554494	0.85[EUR][1000 genomes]
rs7862623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866488	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871807	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:116659400-116685400	Weak transcription	A549	lung
3	chr9:116664000-116674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:116668800-116678800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:116669400-116674400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:116669400-116675000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:116669400-116675400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:116669400-116675400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:116669400-116683000	Weak transcription	Osteobl	bone
14	chr9:116669600-116674400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:116669600-116674400	Weak transcription	Aorta	Aorta
16	chr9:116669600-116674400	Weak transcription	Brain Anterior Caudate	brain
17	chr9:116669600-116675000	Weak transcription	NHDF-Ad	bronchial
18	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:116669800-116674400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:116669800-116674400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:116669800-116674400	Weak transcription	HSMM	muscle
22	chr9:116669800-116675400	Weak transcription	Right Atrium	heart
23	chr9:116669800-116683600	Weak transcription	HUVEC	blood vessel
24	chr9:116670000-116674400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:116670000-116674400	Weak transcription	HSMMtube	muscle
26	chr9:116670000-116675200	Weak transcription	Psoas Muscle	Psoas
27	chr9:116670000-116675600	Weak transcription	Small Intestine	intestine
28	chr9:116670200-116674400	Weak transcription	Fetal Stomach	stomach
29	chr9:116670600-116674400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:116670600-116674400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:116671200-116677400	Weak transcription	Thymus	Thymus
32	chr9:116671600-116675000	Weak transcription	Spleen	Spleen
33	chr9:116671600-116676800	Enhancers	Stomach Mucosa	stomach
34	chr9:116671600-116678000	Weak transcription	Fetal Intestine Large	intestine
35	chr9:116672000-116682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:116672600-116674800	Weak transcription	Lung	lung
37	chr9:116672600-116675400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:116672600-116684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr9:116672800-116674400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:116672800-116675000	Weak transcription	Fetal Intestine Small	intestine
41	chr9:116672800-116681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:116673000-116674600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:116673000-116676800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:116673200-116674400	Weak transcription	Liver	Liver
45	chr9:116673600-116676200	Enhancers	Pancreas	Pancrea
46	chr9:116673600-116677000	Enhancers	Fetal Muscle Leg	muscle
47	chr9:116673600-116677800	Enhancers	Ovary	ovary
48	chr9:116673800-116674600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr9:116674000-116674600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:116674000-116674600	Enhancers	HUES48 Cell Line	embryonic stem cell

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