Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11790976	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11791785	0.96[EUR][1000 genomes]
rs11791817	0.96[EUR][1000 genomes]
rs11792006	0.96[EUR][1000 genomes]
rs11792694	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16910368	1.00[YRI][hapmap]
rs16910517	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16910570	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16910855	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16910950	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1807280	0.82[EUR][1000 genomes]
rs2150013	0.82[EUR][1000 genomes]
rs35678978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554413	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554494	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7862623	0.82[EUR][1000 genomes]
rs7866488	0.82[EUR][1000 genomes]
rs7867159	0.82[EUR][1000 genomes]
rs814681	1.00[AMR][1000 genomes]
rs814685	1.00[AMR][1000 genomes]
rs814695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:116675800-116691800	Weak transcription	Lung	lung
4	chr9:116679200-116689600	Weak transcription	HSMM	muscle
5	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
6	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:116684800-116690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:116684800-116690800	Weak transcription	Osteobl	bone
9	chr9:116686000-116689400	Weak transcription	Fetal Kidney	kidney
10	chr9:116686000-116691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:116686000-116692000	Weak transcription	Fetal Heart	heart
12	chr9:116686600-116689400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:116688000-116688800	Enhancers	HUVEC	blood vessel

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