Variant report

Variant	rs73554494
Chromosome Location	chr9:116716011-116716012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116714888..116717726-chr9:116720128..116722306,2	K562	blood:
2	chr9:116714751..116717397-chr9:116717561..116719359,3	MCF-7	breast:
3	chr9:116708924..116711614-chr9:116714873..116716503,2	MCF-7	breast:
4	chr9:116715151..116717735-chr9:116720132..116722087,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11790976	0.89[EUR][1000 genomes]
rs11791785	1.00[EUR][1000 genomes]
rs11791817	1.00[EUR][1000 genomes]
rs11792006	1.00[EUR][1000 genomes]
rs11792694	0.89[EUR][1000 genomes]
rs16910517	0.89[EUR][1000 genomes]
rs16910570	0.89[EUR][1000 genomes]
rs16910855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910950	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1807280	0.85[EUR][1000 genomes]
rs2150013	0.85[EUR][1000 genomes]
rs35678978	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4287014	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73554413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7862623	0.85[EUR][1000 genomes]
rs7866488	0.85[EUR][1000 genomes]
rs7867159	0.85[EUR][1000 genomes]
rs814681	1.00[AMR][1000 genomes]
rs814685	1.00[AMR][1000 genomes]
rs814695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116692000-116719400	Weak transcription	HMEC	breast
2	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116692400-116717200	Weak transcription	A549	lung
4	chr9:116696200-116719800	Weak transcription	Gastric	stomach
5	chr9:116703600-116719800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:116703800-116716600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:116704400-116717000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:116704600-116716400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:116705800-116716200	Weak transcription	Right Atrium	heart
10	chr9:116706200-116716400	Weak transcription	Aorta	Aorta
11	chr9:116706200-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:116706800-116717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:116707800-116717000	Weak transcription	Fetal Lung	lung
14	chr9:116708600-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:116709000-116720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:116709200-116716800	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:116710400-116719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:116710800-116723000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:116712000-116719800	Weak transcription	Fetal Intestine Small	intestine
21	chr9:116712200-116717000	Weak transcription	Liver	Liver
22	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
23	chr9:116713000-116717400	Weak transcription	Fetal Stomach	stomach
24	chr9:116713000-116719400	Weak transcription	Stomach Mucosa	stomach
25	chr9:116713200-116719800	Weak transcription	Spleen	Spleen
26	chr9:116713400-116716400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:116713400-116719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:116714400-116716800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:116714400-116721200	Enhancers	NHDF-Ad	bronchial
30	chr9:116714600-116716600	Weak transcription	Fetal Kidney	kidney
31	chr9:116714600-116717200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:116714600-116717200	Enhancers	HSMMtube	muscle
33	chr9:116714600-116717400	Enhancers	HSMM	muscle
34	chr9:116714600-116719200	Enhancers	NH-A	brain
35	chr9:116714600-116719600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:116714600-116720400	Enhancers	Osteobl	bone
37	chr9:116714600-116721600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:116714600-116722400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:116714800-116716800	Weak transcription	Pancreas	Pancrea
40	chr9:116714800-116717400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:116715000-116721000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:116715000-116721200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:116715400-116718000	Enhancers	NHLF	lung
44	chr9:116715800-116716200	Enhancers	HUVEC	blood vessel
45	chr9:116715800-116716400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:116716000-116716200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:116716000-116717200	Enhancers	Left Ventricle	heart
48	chr9:116716000-116717200	Enhancers	Lung	lung
49	chr9:116716000-116717600	Enhancers	Ovary	ovary
50	chr9:116716000-116718800	Enhancers	Primary monocytes fromperipheralblood	blood

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