Variant report

Variant	rs16910517
Chromosome Location	chr9:116675407-116675408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116672519..116674297-chr9:116675403..116677434,2	MCF-7	breast:
2	chr9:116667918..116669920-chr9:116674262..116678050,3	MCF-7	breast:
3	chr9:116666788..116668683-chr9:116673616..116675696,2	MCF-7	breast:
4	chr9:116637548..116639400-chr9:116672960..116675906,2	MCF-7	breast:
5	chr9:116637168..116640079-chr9:116674442..116676452,2	MCF-7	breast:
6	chr9:116666574..116671426-chr9:116673853..116679155,7	K562	blood:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11790976	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11791785	0.89[EUR][1000 genomes]
rs11791817	0.89[EUR][1000 genomes]
rs11792006	0.89[EUR][1000 genomes]
rs11792694	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910368	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs16910570	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16910855	0.89[EUR][1000 genomes]
rs16910950	0.89[EUR][1000 genomes]
rs1807280	0.89[EUR][1000 genomes]
rs2150013	0.89[EUR][1000 genomes]
rs35678978	0.85[EUR][1000 genomes]
rs4287014	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs73554413	0.85[EUR][1000 genomes]
rs73554494	0.89[EUR][1000 genomes]
rs7862623	0.89[EUR][1000 genomes]
rs7866488	0.89[EUR][1000 genomes]
rs7867159	0.89[EUR][1000 genomes]
rs7874816	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116659400-116685400	Weak transcription	A549	lung
2	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116668800-116678800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:116669400-116683000	Weak transcription	Osteobl	bone
8	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:116669800-116683600	Weak transcription	HUVEC	blood vessel
10	chr9:116670000-116675600	Weak transcription	Small Intestine	intestine
11	chr9:116671200-116677400	Weak transcription	Thymus	Thymus
12	chr9:116671600-116676800	Enhancers	Stomach Mucosa	stomach
13	chr9:116671600-116678000	Weak transcription	Fetal Intestine Large	intestine
14	chr9:116672000-116682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:116672600-116684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:116672800-116681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:116673000-116676800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:116673600-116676200	Enhancers	Pancreas	Pancrea
19	chr9:116673600-116677000	Enhancers	Fetal Muscle Leg	muscle
20	chr9:116673600-116677800	Enhancers	Ovary	ovary
21	chr9:116674000-116677200	Enhancers	Fetal Muscle Trunk	muscle
22	chr9:116674200-116675600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:116674200-116675800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:116674200-116675800	Enhancers	Esophagus	oesophagus
25	chr9:116674200-116675800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:116674200-116675800	Enhancers	NHLF	lung
27	chr9:116674200-116676000	Enhancers	Gastric	stomach
28	chr9:116674200-116676200	Enhancers	Fetal Lung	lung
29	chr9:116674200-116677600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:116674200-116678200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr9:116674400-116675800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:116674400-116675800	Enhancers	HSMM	muscle
33	chr9:116674400-116676000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:116674400-116676000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:116674400-116676400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:116674400-116676400	Genic enhancers	Fetal Stomach	stomach
37	chr9:116674400-116676400	Enhancers	HSMMtube	muscle
38	chr9:116674400-116676600	Enhancers	Liver	Liver
39	chr9:116674600-116676200	Weak transcription	HMEC	breast
40	chr9:116674600-116677400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:116674600-116679200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:116674600-116681000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:116674600-116682000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:116674800-116675800	Enhancers	Lung	lung
46	chr9:116674800-116679800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:116674800-116681800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr9:116675000-116675600	Enhancers	Brain Anterior Caudate	brain
49	chr9:116675000-116675600	Enhancers	Colon Smooth Muscle	Colon
50	chr9:116675000-116675600	Enhancers	Left Ventricle	heart

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