Variant report

Variant	rs35678978
Chromosome Location	chr9:116697518-116697519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116685876..116688584-chr9:116695722..116697897,2	MCF-7	breast:
2	chr9:116697075..116697894-chr9:116724914..116725592,2	MCF-7	breast:
3	chr9:116690832..116694105-chr9:116696668..116699935,3	K562	blood:
4	chr9:116697012..116698991-chr9:116710633..116712599,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11790976	0.85[EUR][1000 genomes]
rs11791785	0.96[EUR][1000 genomes]
rs11791817	0.96[EUR][1000 genomes]
rs11792006	0.96[EUR][1000 genomes]
rs11792694	0.85[EUR][1000 genomes]
rs16910517	0.85[EUR][1000 genomes]
rs16910570	0.85[EUR][1000 genomes]
rs16910855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16910950	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1807280	0.82[EUR][1000 genomes]
rs2150013	0.82[EUR][1000 genomes]
rs4287014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554494	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7862623	0.82[EUR][1000 genomes]
rs7866488	0.82[EUR][1000 genomes]
rs7867159	0.82[EUR][1000 genomes]
rs814681	1.00[AMR][1000 genomes]
rs814685	1.00[AMR][1000 genomes]
rs814695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116691400-116704200	Weak transcription	HSMM	muscle
2	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:116692000-116704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:116692000-116719400	Weak transcription	HMEC	breast
5	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:116692400-116717200	Weak transcription	A549	lung
7	chr9:116693200-116705400	Weak transcription	Psoas Muscle	Psoas
8	chr9:116693400-116697800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:116693600-116698000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:116693600-116703400	Weak transcription	NH-A	brain
11	chr9:116693600-116704200	Weak transcription	Fetal Lung	lung
12	chr9:116693800-116714200	Weak transcription	Fetal Kidney	kidney
13	chr9:116694200-116704200	Weak transcription	Fetal Stomach	stomach
14	chr9:116694800-116698400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:116695400-116697600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:116695600-116711600	Weak transcription	Liver	Liver
17	chr9:116695800-116698400	Weak transcription	Aorta	Aorta
18	chr9:116695800-116699400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:116695800-116704200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:116695800-116705400	Weak transcription	Lung	lung
21	chr9:116695800-116708800	Weak transcription	Pancreas	Pancrea
22	chr9:116695800-116716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:116696000-116698600	Weak transcription	HUVEC	blood vessel
24	chr9:116696000-116703800	Weak transcription	NHLF	lung
25	chr9:116696000-116714800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:116696200-116699400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:116696200-116699400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:116696200-116701200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:116696200-116719800	Weak transcription	Gastric	stomach
30	chr9:116696600-116698600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:116697000-116697600	Enhancers	Spleen	Spleen
32	chr9:116697000-116697800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:116697000-116698600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:116697000-116699000	Enhancers	Ovary	ovary
35	chr9:116697200-116698200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:116697200-116698200	Strong transcription	Fetal Intestine Small	intestine
37	chr9:116697400-116697600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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