Variant report

Variant	rs11790976
Chromosome Location	chr9:116677182-116677183
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116672519..116674297-chr9:116675403..116677434,2	MCF-7	breast:
2	chr9:116667918..116669920-chr9:116674262..116678050,3	MCF-7	breast:
3	chr9:116656967..116659375-chr9:116676621..116679137,2	K562	blood:
4	chr9:116669450..116672733-chr9:116675778..116678171,3	MCF-7	breast:
5	chr9:116656967..116659375-chr9:116676621..116679137,3	K562	blood:
6	chr9:116666574..116671426-chr9:116673853..116679155,7	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11791785	0.89[EUR][1000 genomes]
rs11791817	0.89[EUR][1000 genomes]
rs11792006	0.89[EUR][1000 genomes]
rs11792694	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16910368	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs16910517	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16910570	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910855	0.89[EUR][1000 genomes]
rs16910950	0.89[EUR][1000 genomes]
rs1807280	0.89[EUR][1000 genomes]
rs2150013	0.89[EUR][1000 genomes]
rs35678978	0.85[EUR][1000 genomes]
rs4287014	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs73554413	0.85[EUR][1000 genomes]
rs73554494	0.89[EUR][1000 genomes]
rs7862623	0.89[EUR][1000 genomes]
rs7866488	0.89[EUR][1000 genomes]
rs7867159	0.89[EUR][1000 genomes]
rs7874816	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116659400-116685400	Weak transcription	A549	lung
2	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116668800-116678800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:116669400-116683000	Weak transcription	Osteobl	bone
8	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:116669800-116683600	Weak transcription	HUVEC	blood vessel
10	chr9:116671200-116677400	Weak transcription	Thymus	Thymus
11	chr9:116671600-116678000	Weak transcription	Fetal Intestine Large	intestine
12	chr9:116672000-116682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:116672600-116684800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:116672800-116681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:116673600-116677800	Enhancers	Ovary	ovary
16	chr9:116674000-116677200	Enhancers	Fetal Muscle Trunk	muscle
17	chr9:116674200-116677600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:116674200-116678200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:116674600-116677400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:116674600-116679200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:116674600-116681000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:116674600-116682000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:116674800-116679800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:116674800-116681800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:116675000-116677800	Strong transcription	Fetal Intestine Small	intestine
27	chr9:116675000-116680200	Weak transcription	Brain Germinal Matrix	brain
28	chr9:116675200-116677600	Enhancers	Psoas Muscle	Psoas
29	chr9:116675200-116678200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:116675200-116681000	Weak transcription	Brain Angular Gyrus	brain
31	chr9:116675200-116684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:116675400-116683200	Weak transcription	NHDF-Ad	bronchial
33	chr9:116675400-116684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:116675600-116680800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:116675600-116682000	Weak transcription	Brain Anterior Caudate	brain
36	chr9:116675600-116684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:116675800-116677800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr9:116675800-116678600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:116675800-116678600	Weak transcription	HSMM	muscle
40	chr9:116675800-116680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:116675800-116681000	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:116675800-116681000	Weak transcription	Right Atrium	heart
43	chr9:116675800-116681600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:116675800-116683400	Weak transcription	NHLF	lung
45	chr9:116675800-116683600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:116675800-116684600	Weak transcription	Esophagus	oesophagus
47	chr9:116675800-116686000	Weak transcription	Colonic Mucosa	Colon
48	chr9:116675800-116691800	Weak transcription	Lung	lung
49	chr9:116676000-116677400	Enhancers	Colon Smooth Muscle	Colon
50	chr9:116676000-116678800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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