Variant report

Variant	rs11792006
Chromosome Location	chr9:116708823-116708824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116707223..116710923-chr9:116723048..116727308,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11790976	0.89[EUR][1000 genomes]
rs11791785	1.00[EUR][1000 genomes]
rs11791817	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11792694	0.89[EUR][1000 genomes]
rs12115203	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12115208	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12115526	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12115719	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16910517	0.89[EUR][1000 genomes]
rs16910570	0.89[EUR][1000 genomes]
rs16910836	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16910855	1.00[EUR][1000 genomes]
rs16910937	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16910941	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16910946	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16910950	1.00[EUR][1000 genomes]
rs16910951	1.00[ASN][1000 genomes]
rs16910968	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs16936489	1.00[JPT][hapmap]
rs1807280	0.85[EUR][1000 genomes]
rs2150013	0.85[EUR][1000 genomes]
rs2761689	0.81[AMR][1000 genomes]
rs2761690	0.81[AMR][1000 genomes]
rs35678978	0.96[EUR][1000 genomes]
rs4287014	0.96[EUR][1000 genomes]
rs6478053	1.00[MEX][hapmap]
rs7034053	1.00[JPT][hapmap]
rs7041279	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs73554413	0.96[EUR][1000 genomes]
rs73554494	1.00[EUR][1000 genomes]
rs7862623	0.85[EUR][1000 genomes]
rs7866488	0.85[EUR][1000 genomes]
rs7867159	0.85[EUR][1000 genomes]
rs814678	1.00[AMR][1000 genomes]
rs814679	0.81[AMR][1000 genomes]
rs814682	1.00[GIH][hapmap];0.81[AMR][1000 genomes]
rs814683	1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs814684	1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs814687	0.81[AMR][1000 genomes]
rs814688	0.81[AMR][1000 genomes]
rs814689	0.81[AMR][1000 genomes]
rs814690	0.81[AMR][1000 genomes]
rs814691	0.81[AMR][1000 genomes]
rs814692	0.81[AMR][1000 genomes]
rs814693	0.81[AMR][1000 genomes]
rs814694	1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116691800-116709000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:116692000-116719400	Weak transcription	HMEC	breast
3	chr9:116692400-116716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:116692400-116717200	Weak transcription	A549	lung
5	chr9:116693800-116714200	Weak transcription	Fetal Kidney	kidney
6	chr9:116695600-116711600	Weak transcription	Liver	Liver
7	chr9:116695800-116716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:116696000-116714800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:116696200-116719800	Weak transcription	Gastric	stomach
10	chr9:116697600-116715000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:116703600-116714600	Weak transcription	NH-A	brain
12	chr9:116703600-116719800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:116703800-116716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:116703800-116716600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:116704200-116713000	Strong transcription	Fetal Stomach	stomach
16	chr9:116704200-116715400	Weak transcription	NHLF	lung
17	chr9:116704400-116709000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:116704400-116714400	Weak transcription	NHDF-Ad	bronchial
19	chr9:116704400-116714600	Weak transcription	HSMMtube	muscle
20	chr9:116704400-116714600	Weak transcription	Osteobl	bone
21	chr9:116704400-116717000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:116704600-116712600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr9:116704600-116716400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:116704800-116714600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:116705200-116714000	Weak transcription	HUVEC	blood vessel
26	chr9:116705400-116712000	Weak transcription	Brain Germinal Matrix	brain
27	chr9:116705400-116714600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:116705600-116712400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:116705800-116709000	Weak transcription	Fetal Muscle Leg	muscle
30	chr9:116705800-116709800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:116705800-116710200	Weak transcription	Spleen	Spleen
32	chr9:116705800-116715800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:116705800-116716200	Weak transcription	Right Atrium	heart
34	chr9:116706200-116716400	Weak transcription	Aorta	Aorta
35	chr9:116706200-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:116706400-116709400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:116706400-116709800	Weak transcription	Ovary	ovary
38	chr9:116706800-116717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:116707800-116714600	Weak transcription	HSMM	muscle
40	chr9:116707800-116717000	Weak transcription	Fetal Lung	lung
41	chr9:116708200-116712000	Strong transcription	Fetal Intestine Small	intestine
42	chr9:116708400-116710400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:116708400-116711200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:116708600-116712200	Weak transcription	Fetal Brain Female	brain
45	chr9:116708600-116716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:116708800-116709000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:116708800-116709000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:116708800-116709000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:116708800-116709000	Genic enhancers	Pancreas	Pancrea
50	chr9:116708800-116709200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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