Variant report

Variant	rs16936489
Chromosome Location	chr9:116717772-116717773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116714751..116717397-chr9:116717561..116719359,3	MCF-7	breast:
2	chr9:116716226..116718549-chr9:116720806..116723650,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10156410	1.00[AMR][1000 genomes]
rs11792006	1.00[JPT][hapmap]
rs12115203	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115208	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115526	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115719	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910725	1.00[YRI][hapmap]
rs16910836	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910937	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910941	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910946	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16910963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56807995	1.00[AMR][1000 genomes]
rs7034053	1.00[JPT][hapmap]
rs73554406	1.00[AMR][1000 genomes]
rs814678	1.00[ASN][1000 genomes]
rs871807	1.00[YRI][hapmap]
rs9942859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116692000-116719400	Weak transcription	HMEC	breast
2	chr9:116696200-116719800	Weak transcription	Gastric	stomach
3	chr9:116703600-116719800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:116709000-116720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:116710400-116719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:116710800-116723000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:116712000-116719800	Weak transcription	Fetal Intestine Small	intestine
9	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:116713000-116719400	Weak transcription	Stomach Mucosa	stomach
11	chr9:116713200-116719800	Weak transcription	Spleen	Spleen
12	chr9:116713400-116719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:116714400-116721200	Enhancers	NHDF-Ad	bronchial
14	chr9:116714600-116719200	Enhancers	NH-A	brain
15	chr9:116714600-116719600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:116714600-116720400	Enhancers	Osteobl	bone
17	chr9:116714600-116721600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:116714600-116722400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:116715000-116721000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:116715000-116721200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:116715400-116718000	Enhancers	NHLF	lung
22	chr9:116716000-116718800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr9:116716000-116718800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:116716000-116720800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:116716200-116717800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr9:116716200-116718200	Flanking Active TSS	HUVEC	blood vessel
27	chr9:116716200-116718800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr9:116716200-116730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:116716400-116719800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:116716600-116719000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr9:116716600-116720600	Enhancers	Fetal Kidney	kidney
32	chr9:116716800-116717800	Enhancers	Fetal Muscle Leg	muscle
33	chr9:116716800-116718400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr9:116716800-116718400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:116716800-116721000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:116716800-116723000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:116717000-116717800	Enhancers	Liver	Liver
38	chr9:116717000-116718200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:116717000-116718400	Enhancers	Primary hematopoietic stem cells	blood
40	chr9:116717000-116720800	Enhancers	Adipose Nuclei	Adipose
41	chr9:116717000-116720800	Enhancers	Fetal Lung	lung
42	chr9:116717000-116721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr9:116717000-116723400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr9:116717000-116730000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:116717000-116733200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:116717200-116717800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:116717200-116717800	Flanking Active TSS	HSMMtube	muscle
48	chr9:116717200-116718800	Weak transcription	Lung	lung
49	chr9:116717200-116718800	Weak transcription	Pancreas	Pancrea
50	chr9:116717200-116719600	Enhancers	A549	lung

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