Variant report

Variant	rs10156410
Chromosome Location	chr9:116726390-116726391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116725519..116727156-chr9:116735681..116737844,2	K562	blood:
2	chr3:143688929..143690453-chr9:116724811..116727064,2	MCF-7	breast:
3	chr9:116720397..116723417-chr9:116724656..116727366,3	MCF-7	breast:
4	chr9:116707223..116710923-chr9:116723048..116727308,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12115203	1.00[AMR][1000 genomes]
rs12115208	1.00[AMR][1000 genomes]
rs12115526	1.00[AMR][1000 genomes]
rs12115719	1.00[AMR][1000 genomes]
rs16910836	1.00[AMR][1000 genomes]
rs16910937	1.00[AMR][1000 genomes]
rs16910941	1.00[AMR][1000 genomes]
rs16910946	1.00[AMR][1000 genomes]
rs16910951	1.00[AMR][1000 genomes]
rs16910963	1.00[AMR][1000 genomes]
rs16936489	1.00[AMR][1000 genomes]
rs56807995	1.00[AMR][1000 genomes]
rs73554406	1.00[AMR][1000 genomes]
rs9942859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:116716200-116730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:116717000-116730000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:116717000-116733200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:116717400-116735600	Weak transcription	Fetal Heart	heart
8	chr9:116717600-116730200	Weak transcription	Psoas Muscle	Psoas
9	chr9:116718000-116731400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:116718400-116728600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:116718600-116731000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:116720000-116726400	Weak transcription	Right Ventricle	heart
13	chr9:116720000-116728000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:116720000-116728000	Weak transcription	Spleen	Spleen
15	chr9:116720400-116731400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:116720400-116731400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:116720400-116731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr9:116720800-116731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:116720800-116736400	Weak transcription	Aorta	Aorta
21	chr9:116720800-116750600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:116721000-116726400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:116721000-116728000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:116721000-116728000	Weak transcription	HSMM	muscle
25	chr9:116721000-116728200	Weak transcription	Ovary	ovary
26	chr9:116721000-116731200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:116721000-116731400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:116721000-116731400	Weak transcription	HMEC	breast
29	chr9:116721200-116728000	Weak transcription	Fetal Intestine Large	intestine
30	chr9:116721200-116731000	Weak transcription	A549	lung
31	chr9:116721200-116731400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:116721200-116731400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:116721200-116731400	Weak transcription	NH-A	brain
34	chr9:116721200-116735600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:116721200-116735600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:116721200-116750800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:116721200-116756400	Weak transcription	NHEK	skin
38	chr9:116721400-116751200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:116723000-116728000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:116723400-116727600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:116723400-116731200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:116723400-116731400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:116723600-116726600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:116723600-116728400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:116723800-116728000	Weak transcription	HSMMtube	muscle
46	chr9:116723800-116728000	Weak transcription	NHLF	lung
47	chr9:116723800-116731600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:116724400-116726600	Enhancers	HUVEC	blood vessel
49	chr9:116724600-116727600	Enhancers	NHDF-Ad	bronchial
50	chr9:116724800-116726600	Enhancers	Fetal Kidney	kidney

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