Variant report

Variant	rs16910363
Chromosome Location	chr9:116658064-116658065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116656967..116659375-chr9:116676621..116679137,3	K562	blood:
2	chr9:116646875..116648499-chr9:116655212..116658184,3	MCF-7	breast:
3	chr3:64430080..64432843-chr9:116656988..116658714,2	MCF-7	breast:
4	chr9:116656967..116659375-chr9:116676621..116679137,2	K562	blood:
5	chr9:116643565..116646424-chr9:116657254..116659001,2	K562	blood:
6	chr9:116657492..116660470-chr9:116661016..116662633,2	K562	blood:

Variant related genes	Relation type
ENSG00000244564	Chromatin interaction
ENSG00000163637	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10817521	0.85[AMR][1000 genomes]
rs10981930	0.85[AMR][1000 genomes]
rs10981945	0.88[AMR][1000 genomes]
rs10981983	0.88[AMR][1000 genomes]
rs10981988	0.83[AMR][1000 genomes]
rs12551599	0.81[ASN][1000 genomes]
rs12554824	0.81[AMR][1000 genomes]
rs1536967	0.88[AMR][1000 genomes]
rs1590887	0.88[AMR][1000 genomes]
rs16910261	0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs16910491	1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16910655	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1807280	0.93[ASN][1000 genomes]
rs1999203	0.81[AMR][1000 genomes]
rs2150013	1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2150016	1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35075864	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4978558	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4979299	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4979304	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4979305	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58148408	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58242755	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60615197	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60678033	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61033589	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7032965	0.88[AMR][1000 genomes]
rs7862623	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7866488	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7867159	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs871807	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9777523	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116663400	Weak transcription	Gastric	stomach
2	chr9:116649600-116660000	Weak transcription	Small Intestine	intestine
3	chr9:116649800-116663800	Weak transcription	HSMMtube	muscle
4	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:116650600-116662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:116651000-116662600	Weak transcription	Fetal Intestine Small	intestine
7	chr9:116651000-116662800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:116651000-116668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:116651200-116663200	Weak transcription	Fetal Stomach	stomach
10	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:116652200-116668400	Weak transcription	NH-A	brain
12	chr9:116653000-116663800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:116653200-116658400	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:116653200-116660400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:116653200-116668400	Weak transcription	NHLF	lung
16	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
18	chr9:116653400-116669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:116653800-116665400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:116653800-116669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:116654000-116661400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:116654200-116658400	Enhancers	Liver	Liver
24	chr9:116654400-116665400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:116654400-116668200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:116654600-116663600	Weak transcription	HSMM	muscle
27	chr9:116655400-116660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:116655400-116661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:116655400-116664000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:116655600-116659200	Weak transcription	A549	lung
31	chr9:116655600-116661200	Weak transcription	Pancreas	Pancrea
32	chr9:116655600-116663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:116655600-116663400	Weak transcription	Ovary	ovary
34	chr9:116657400-116658200	Enhancers	NHDF-Ad	bronchial
35	chr9:116657800-116658200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:116657800-116658200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr9:116657800-116660600	Enhancers	HUVEC	blood vessel
38	chr9:116658000-116658200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:116658000-116668400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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