Variant report
| Variant | rs10981983 |
|---|---|
| Chromosome Location | chr9:116631673-116631674 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:116630964..116633382-chr9:116635893..116638560,3 | K562 | blood: | |
| 2 | chr9:116630970..116632987-chr9:116633350..116636148,2 | MCF-7 | breast: | |
| 3 | chr9:116630492..116633241-chr9:116633599..116635437,2 | K562 | blood: | |
| 4 | chr9:116630262..116631877-chr9:116637021..116638597,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000157657 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10817521 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10817523 | 0.82[AMR][1000 genomes] |
| rs10981930 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10981945 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10981988 | 0.95[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10981990 | 0.86[AMR][1000 genomes] |
| rs12551439 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1326324 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1536967 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1571033 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1590887 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16909454 | 0.83[AMR][1000 genomes] |
| rs16910261 | 0.92[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16910363 | 0.88[AMR][1000 genomes] |
| rs35929232 | 0.89[AMR][1000 genomes] |
| rs4978558 | 0.90[AMR][1000 genomes] |
| rs56730168 | 0.82[AMR][1000 genomes] |
| rs58148408 | 0.90[AMR][1000 genomes] |
| rs58242755 | 0.85[AMR][1000 genomes] |
| rs60615197 | 0.90[AMR][1000 genomes] |
| rs60678033 | 0.85[AMR][1000 genomes] |
| rs61533724 | 0.81[AMR][1000 genomes] |
| rs7032965 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs913078 | 0.82[ASN][1000 genomes] |
| rs9777523 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430093 | chr9:116330446-117325446 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:116630600-116631800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr9:116630800-116632000 | Enhancers | K562 | blood |
