Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:116606252..116608335-chr9:116633105..116635446,2	K562	blood:
2	chr9:116630492..116633241-chr9:116633599..116635437,2	K562	blood:
3	chr9:116630970..116632987-chr9:116633350..116636148,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10817521	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10981930	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10981945	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10981982	0.81[AMR][1000 genomes]
rs10981983	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10981990	0.81[AMR][1000 genomes]
rs12551439	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1326324	0.85[AMR][1000 genomes]
rs1536967	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1571033	0.85[AMR][1000 genomes]
rs1590887	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16910261	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16910363	0.83[AMR][1000 genomes]
rs35929232	0.84[AMR][1000 genomes]
rs4978558	0.85[AMR][1000 genomes]
rs57848797	0.82[AMR][1000 genomes]
rs58148408	0.85[AMR][1000 genomes]
rs58242755	0.80[AMR][1000 genomes]
rs60615197	0.85[AMR][1000 genomes]
rs60668360	0.80[AMR][1000 genomes]
rs60678033	0.80[AMR][1000 genomes]
rs7032965	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9777523	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116634400-116635400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:116634400-116636000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116634400-116636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:116634400-116637800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:116634600-116635800	Enhancers	NHEK	skin
6	chr9:116635200-116636600	Enhancers	HMEC	breast

Quick Search: