Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116621399..116624032-chr9:116637278..116640167,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10817521	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10817523	0.82[AMR][1000 genomes]
rs10981930	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10981945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10981983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981988	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10981990	0.86[AMR][1000 genomes]
rs12551439	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1326324	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1571033	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16909454	0.83[AMR][1000 genomes]
rs16910261	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16910363	0.88[AMR][1000 genomes]
rs35929232	0.89[AMR][1000 genomes]
rs4978558	0.90[AMR][1000 genomes]
rs56730168	0.82[AMR][1000 genomes]
rs58148408	0.90[AMR][1000 genomes]
rs58242755	0.85[AMR][1000 genomes]
rs60615197	0.90[AMR][1000 genomes]
rs60678033	0.85[AMR][1000 genomes]
rs61533724	0.81[AMR][1000 genomes]
rs7032965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs913078	0.85[ASN][1000 genomes]
rs9777523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116621400-116623600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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