Variant report

Variant	rs16910261
Chromosome Location	chr9:116643117-116643118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116636676..116640667-chr9:116641592..116647526,6	MCF-7	breast:
2	chr9:116641182..116644797-chr9:116645893..116648885,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10817521	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.89[AMR][1000 genomes]
rs10817523	0.86[AMR][1000 genomes]
rs10981930	0.89[AMR][1000 genomes]
rs10981945	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10981982	0.81[AMR][1000 genomes]
rs10981983	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10981988	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981990	0.91[AMR][1000 genomes]
rs12551439	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1326324	0.82[AMR][1000 genomes]
rs1536967	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1571033	0.82[AMR][1000 genomes]
rs1590887	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16909454	0.87[AMR][1000 genomes]
rs16910363	0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs16910491	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs1999203	0.81[MEX][hapmap]
rs2150013	0.84[JPT][hapmap]
rs2150016	0.84[JPT][hapmap]
rs35075864	0.87[AMR][1000 genomes]
rs35929232	0.94[AMR][1000 genomes]
rs4978558	0.85[AMR][1000 genomes]
rs4979304	0.80[CHD][hapmap];0.91[MEX][hapmap]
rs56730168	0.86[AMR][1000 genomes]
rs57848797	0.82[AMR][1000 genomes]
rs58148408	0.85[AMR][1000 genomes]
rs58242755	0.81[AMR][1000 genomes]
rs60615197	0.85[AMR][1000 genomes]
rs60678033	0.81[AMR][1000 genomes]
rs61533724	0.85[AMR][1000 genomes]
rs7032965	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs871807	0.82[MEX][hapmap]
rs9777523	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116644000	Weak transcription	Pancreas	Pancrea
2	chr9:116639200-116646400	Weak transcription	Psoas Muscle	Psoas
3	chr9:116639200-116647000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:116639200-116647400	Weak transcription	Esophagus	oesophagus
5	chr9:116639200-116647800	Weak transcription	Left Ventricle	heart
6	chr9:116639200-116652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:116639200-116663400	Weak transcription	Gastric	stomach
8	chr9:116639600-116644000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:116639600-116646800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:116639600-116647400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:116639600-116648000	Weak transcription	Thymus	Thymus
12	chr9:116639600-116648200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:116639600-116648400	Weak transcription	Colonic Mucosa	Colon
14	chr9:116639800-116644000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:116639800-116644200	Weak transcription	Right Atrium	heart
16	chr9:116639800-116645400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:116639800-116647000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:116639800-116647200	Weak transcription	Stomach Mucosa	stomach
19	chr9:116639800-116647400	Weak transcription	NHEK	skin
20	chr9:116639800-116648200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:116639800-116648200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:116639800-116648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr9:116639800-116648400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:116640000-116647200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:116640000-116647800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:116640000-116648200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:116640200-116644000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:116640200-116644400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:116640200-116646800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:116640200-116648200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:116640400-116648000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:116640600-116646800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr9:116640800-116647000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:116640800-116648200	Weak transcription	A549	lung
35	chr9:116640800-116648400	Weak transcription	HSMMtube	muscle
36	chr9:116641000-116646800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr9:116641000-116646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:116641200-116646800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr9:116641200-116647400	Weak transcription	NH-A	brain
40	chr9:116641200-116648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:116641200-116648000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:116641200-116648200	Weak transcription	Fetal Intestine Small	intestine
43	chr9:116641400-116644000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr9:116641600-116647000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:116642000-116643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:116642000-116644000	Weak transcription	Lung	lung
47	chr9:116642000-116644200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:116642000-116647000	Weak transcription	HMEC	breast
49	chr9:116642000-116648200	Weak transcription	Brain Anterior Caudate	brain
50	chr9:116642000-116649400	Weak transcription	H9 Cell Line	embryonic stem cell

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