Variant report

Variant	rs12551439
Chromosome Location	chr9:116566360-116566361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10122669	0.83[ASN][1000 genomes]
rs10817521	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817523	0.91[AMR][1000 genomes]
rs10981930	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981945	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10981983	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10981988	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10981990	0.89[AMR][1000 genomes]
rs1326324	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1536967	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1571033	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590887	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16909454	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16910261	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35075864	0.82[AMR][1000 genomes]
rs35929232	0.92[AMR][1000 genomes]
rs4978558	0.80[AMR][1000 genomes]
rs56730168	0.85[AMR][1000 genomes]
rs57848797	0.81[AMR][1000 genomes]
rs58148408	0.80[AMR][1000 genomes]
rs60615197	0.80[AMR][1000 genomes]
rs60769152	0.86[AFR][1000 genomes]
rs61533724	0.84[AMR][1000 genomes]
rs7030473	0.84[ASN][1000 genomes]
rs7032965	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7046380	0.84[ASN][1000 genomes]
rs7046526	0.84[ASN][1000 genomes]
rs7046799	0.84[ASN][1000 genomes]
rs73548538	0.85[AFR][1000 genomes]
rs73548554	0.82[AFR][1000 genomes]
rs913078	0.96[ASN][1000 genomes]
rs9777523	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116565600-116566800	Enhancers	Primary neutrophils fromperipheralblood	blood

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